Table 3.
Real data: selection results using a BFDR of 0.1
| KEGG ID | Pathway | Taxa | MPPI | β pj |
|---|---|---|---|---|
| ko04660 | T cell receptor signaling pathway | g.Subdoligranulum | 1.00 | 0.40 |
| ko04512 | ECM-receptor interaction | g.Subdoligranulum | 1.00 | 0.44 |
| ko00680 | Methane metabolism | g.Sutterella | 1.00 | -1.47 |
| ko05200 | Pathways in cancer | o.Bacteroidales | 1.00 | -1.04 |
| ko04540 | Gap junction | o.Bacteroidales | 1.00 | -0.92 |
| ko00534 | Glycosaminoglycan biosynthesis | g.Ruminococcus | 1.00 | -0.56 |
| ko00053 | Ascorbate and aldarate metabolism | g.Ruminococcus | 1.00 | -0.46 |
| ko00650 | Butanoate metabolism | g.Ruminococcus | 1.00 | -0.55 |
| ko00513 | Various types of N-glycan biosynthesis | g.Parabacteroides | 1.00 | 0.54 |
| ko00500 | Starch and sucrose metabolism | g.Parabacteroides | 1.00 | -0.61 |
| ko00904 | Diterpenoid biosynthesis | g.Dialister | 1.00 | -1.21 |
| ko00360 | Phenylalanine metabolism | g.Dialister | 1.00 | -2.18 |
| ko00626 | Naphthalene degradation | g.Bacteroides | 1.00 | 0.39 |
| ko00010 | Glycolysis / Gluconeogenesis | g.Bacteroides | 1.00 | -0.57 |
| ko00513 | Various types of N-glycan biosynthesis | g.Prevotella | 1.00 | 0.77 |
| ko00512 | Mucin type O-Glycan biosynthesis | g.Prevotella | 1.00 | -1.06 |
| ko00620 | Pyruvate metabolism | g.Prevotella | 1.00 | -1.76 |
| ko04340 | Hedgehog signaling pathway | g.Ruminococcus | 1.00 | 0.45 |
| ko04660 | T cell receptor signaling pathway | g.Roseburia | 1.00 | 0.46 |
| ko00983 | Drug metabolism | g.Sutterella | 1.00 | -1.20 |
| ko00260 | Glycine, serine and threonine metabolism | o.Bacteroidales | 1.00 | 0.88 |
| ko00330 | Arginine and proline metabolism | g.Ruminococcus | 0.99 | 0.39 |
| ko01057 | Biosynthesis of type II polyketide products | o.Bacteroidales | 0.99 | 0.76 |
| ko00620 | Pyruvate metabolism | g.Ruminococcus | 0.99 | 0.56 |
| ko00920 | Sulfur metabolism | f.Prevotellaceae | 0.99 | 1.36 |
| ko00010 | Glycolysis/Gluconeogenesis | o.Clostridiales | 0.98 | 0.54 |
The text in the KEGG column is hyperlinked to the KEGG orthology database for a more complete description of the selected pathways. Taxa names start with “g.”, “f.” or “o.” which stand for genus, family, or order, respectively, and correspond to the lowest taxonomic classification available