. Author manuscript; available in PMC: 2017 Feb 10.

Published in final edited form as: J Neuroimmunol. 2008 Jul 3;200(1-2):145–152. doi: 10.1016/j.jneuroim.2008.05.016

Table 3.

Association of SNP haplotypes with SLE

Association with SLE

Gene	Haplotype markers	Haplotype	Haplotype frequency in controls/SLE	SLE–control

				χ²	P
3′ to CCL14-nonsyn CCL14	PG28–PG29	CT	0.764/0.600	20.68	5.44⁻⁶
		AT	0.173/0.315	19.26	1.14⁻⁵
3′ to CCL14-5′ to CCL14	PG28–PG29–PG30–PG31–PG32	CTAAG	0.687/0.544	13.18	3.00⁻⁴
		ATAAG	0.092/0.188	13.88	2.00⁻⁴

Haplotypes of PG28–29 and PG28–29–30–31–32 show significant associations with SLE, while none of the haplotypes are associated with MS (data not shown) after correction for multiple testing. The PG28–29 haplotype defined by the A–T alleles, and the PG28–PG29–PG30–PG31–PG32 haplotype defined by the A–T–A–A–G alleles are increased in SLE.