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. 2017 Feb 10;7:42252. doi: 10.1038/srep42252

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Copyright © 2017, The Author(s)

This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/

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(a) BLASTn based comparison of the acI genomes. Matches satisfying the length (≥60 bp) and score (≥50) cutoffs were displayed as red (same orientation) and blue (reverse orientation) blocks using the Artemis Comparison Tool. (b) Venn diagram showing the number of shared and unique protein clusters (PCs) among the acI genomes, as analyzed using GET_HOMOLOGUES. The lower table shows the number of shared PCs between the genome pairs. Note that the total number of PCs of each genome is slightly smaller than the total number of CDSs, due to putative paralogous proteins. (c) AAI among the acI genomes obtained in the present study and related SAGs. AAI values were obtained from GET_HOMOLOGUES. Clustering of genomes based on AAI were performed using the ‘hclust’ function of R.