Figure 3.

Screenshot of the easyGWAS Detailed SNP View.

The “Detailed SNP” view of a SNP gives more detailed information and annotation about the selected SNP and its close neighborhood, illustrated in this screenshot.

(A) A donut diagram with the allele distribution of the selected SNP.

(B) A box plot with the trait values for each allele is shown.

(C) The distribution of genes and the LD pattern around the focal SNP. The panel at the bottom shows more detailed annotations for the focal SNP, e.g., if a SNP is a missense variant, frameshift, or stop codon.