Table 1.
Genome assembly and annotation summary
| M. persicae | A. pisum | ||
|---|---|---|---|
| Statistic | Clone O | Clone G006 | Release 2.1b |
| Genome | |||
| No. sequences (> = 1 kb) | 13,407 | 4018 | 12,969 |
| Largest scaffold | 1,018,155 | 2,199,663 | 3,073,041 |
| Total length | 354,698,803 | 347,304,760 | 541,675,471 |
| Total length (> = 1 kb) | 354,698,803 | 347,300,841 | 532,843,107 |
| Scaffold N50 | 164,460 | 435,781 | 570,863 |
| Contig N50 | 59,051 | 71,400 | 28,209 |
| GC% | 30.19 | 30.03 | 29.69 |
| # Ns | 11,562,637 | 1,836,185 | 36,934,320 |
| Median kmer coverage | 44× | 51× | NA |
| CEGMA (% complete/partial) | 94.76/98.39 | 94.35/98.39 | 93.15/97.98 |
| Annotation | |||
| Gene count (Coding) | 18,433 | 18,529 | 36,939 |
| Total transcripts | 30,247 | 30,127 | 36,939 |
| Transcripts per gene | 1.64 | 1.63 | 1.00 |
| Transcript mean size complementary DNA (bp) | 2119.36 | 2163.47 | 1964.11 |