Table 2. Differentially expressed transcription factors.
These are transcription factors with differential expression between SA36 and SA118 in leaf, root and nodule under N-fixing condition, but were not differentially expressed under non-fixing conditions.
| Gene Identifier | Chr. (Position in bp) | Transcription Factor | Log2FC | Adj. P |
|---|---|---|---|---|
| Leaf: Up-regulated in SA36 | ||||
| Phvul.004G122000 | Pv04 (39326716–39327951) | AP2 | 2.5 | 0.0070 |
| Phvul.001G187000 | Pv01 (45258083–45261720) | GT-2 | 2.2 | 0.0056 |
| Phvul.010G148700 | Pv10 (41934612–41940511) | Homeobox | 2.0 | 1.2E-08 |
| Leaf: Up-regulated in SA118 | ||||
| Phvul.005G018500 | Pv05 (1604423–1605864) | MYB | -2.2 | 1.1E-06 |
| Phvul.006G074600 | Pv06 (19393601–19396850) | WRKY | -3.2 | 0.0068 |
| Root: Up-regulated in SA36 | ||||
| Phvul.002G292600 | Pv02 (45587489–45590225) | MYB | 2.6 | 3.2E-08 |
| Phvul.007G208400 | Pv07 (44697797–44699909) | MYB | 2.1 | 0.0010 |
| Phvul.004G171200 | Pv04 (45277672–45279263) | MYB | 2.0 | 0.0045 |
| Root: Up-regulated in SA118 | ||||
| Phvul.006G188900 | Pv06 (29705815–29707591) | NAM | -2.3 | 0.0044 |
| Phvul.001G044500 | Pv01 (4680371–4681060) | AP2 | -4.2 | 5.0E-05 |
| Phvul.006G106100 | Pv06 (22259920–22260531) | AP2 | -2.6 | 0.0032 |
| Nodule: Up-regulated in SA36 | ||||
| Phvul.003G094700 | Pv03 (19512352–19514272) | bHLH | 5.0 | 1.2E-12 |
| Phvul.010G148700 | Pv10 (41934612–41940511) | Homeobox | 2.3 | 3.9E-04 |
| Phvul.011G005800 | Pv11 (430648–437018) | MADS BOX | 3.3 | 1.9E-17 |
| Phvul.007G048000 | Pv07 (3876555–3877440) | MADS BOX | 2.8 | 0.0093 |
| Phvul.004G162100 | Pv04 (44426684–44427426) | MBF1 | 3.5 | 5.9E-05 |
| Nodule: Up-regulated in SA118 | ||||
| Phvul.004G169800 | Pv04 (45126736–45127899) | AP2 | -5.0 | 1.5E-15 |
| Phvul.010G050500 | Pv10 (8020695–8021348) | AP2 | -5.7 | 3.1E-16 |
| Phvul.001G044500 | Pv01 (4680371–4681060) | AP2 | -4.1 | 4.4E-05 |
| Phvul.009G196900 | Pv09 (29159605–29160767) | AP2 | -2.4 | 0.0066 |
| Phvul.002G036000 | Pv02 (3561530–3562521) | AP2 | -2.8 | 0.0088 |
| Phvul.010G050800 | Pv10 (8082893–8083593) | AP2 | -3.0 | 1.4E-08 |
| Phvul.003G102500 | Pv03 (25181566–25183062) | AP2 | -3.2 | 0.0001 |
| Phvul.003G212800 | Pv03 (42804542–42805711) | AP2 | -3.9 | 9.5E-06 |
| Phvul.003G292400 | Pv03 (51831261–51832171) | AP2 | -4.0 | 4.0E-07 |
| Phvul.007G273000 | Pv07 (51127595–51128470) | AP2 | -2.9 | 0.0008 |
| Phvul.002G007500 | Pv02 (860605–862788) | bHLH | -2.1 | 0.0056 |
| Phvul.003G231200 | Pv03 (45237056–45239851) | bHLH | -2.5 | 0.0005 |
| Phvul.003G231100 | Pv03 (45216543–45218543) | bHLH | -3.4 | 0.0003 |
| Phvul.011G024700 | Pv11 (2054940–2056988) | NAM | -2.8 | 2.8E-14 |
| Phvul.009G152900 | Pv09 (22214660–22216369) | NAM | -2.7 | 4.4E-05 |
| Phvul.003G248500 | Pv03 (47458824–47459525) | Dof | -2.4 | 5.9E-06 |
| Phvul.003G212200 | Pv03 (42719744–42722190) | GRAS | -2.5 | 0.0015 |
| Phvul.011G109600 | Pv11 (13902942–13904399) | MYB | -3.7 | 0.0003 |
| Phvul.007G108500 | Pv07 (13461806–13464239) | MYB | -2.1 | 3.0E-11 |
| Phvul.003G232300 | Pv03 (45418410–45419954) | MYB | -2.2 | 0.0083 |
| Phvul.001G215100 | Pv01 (47821425–47822714) | MYB | -3.3 | 0.0001 |
| Phvul.007G242300 | Pv07 (48190783–48192713) | MYB | -4.6 | 8.3E-09 |
| Phvul.004G053600 | Pv04 (6865813–6867929) | MYB | -2.5 | 0.0001 |
| Phvul.009G062700 | Pv09 (10947123–10947797) | MYB | -2.7 | 0.0001 |
| Phvul.007G211800 | Pv07 (45045204–45046968) | MYB | -2.9 | 0.0026 |
| Phvul.003G173300 | Pv03 (38424473–38426629) | PLATZ | -2.4 | 0.0021 |
| Phvul.002G265400 | Pv02 (43085670–43087004) | WRKY | -2.0 | 1.1E-07 |
| Phvul.006G111700 | Pv06 (22762481–22764805) | WRKY | -2.1 | 8.8E-07 |
| Phvul.005G181800 | Pv05 (40322573–40324669) | WRKY | -2.1 | 0.0009 |
| Phvul.002G297100 | Pv02 (46023368–46025419) | WRKY | -3.5 | 1.6E-13 |
| Phvul.009G137500 | Pv09 (20185631–20187441) | WRKY | -4.0 | 9.8E-10 |
| Phvul.010G111900 | Pv10 (37576223–37578860) | WRKY | -4.4 | 3.3E-25 |
Chr., chromosome; Position, is the physical position in base pair (bp); Log2FC, Log2 fold change in expression of SA36 over SA118; Adj. P, is the corrected P-value for FDR = 0.01