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. 2017 Feb 14;7:41477. doi: 10.1038/srep41477

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Copyright © 2017, The Author(s)

This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/

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Data for gene expression levels were normalized to z-score with the formula log10 (FPKM + 1) by color key and density plot, namely, the from-green-to-red color represents the value of gene expression from low to high during fruit ripening. The gene-coding proteins annotated in the relative pathways: oxidative phosphorylation [NADH dehydrogenase (ubiquinone) flavoprotein 1, H⁺-transporting ATPase]; glutathione metabolism [glutathione S-transferase (GST), L-ascorbate peroxidase (Vc)]; abscisic acid [ABA, serine/threonine-protein kinase SRK2, protein phosphatase 2C (PP2C)]; protein processing (heat shock 70 kDa protein 5, heat shock 70 kDa protein 1/8, molecular chaperone HtpG); RNA transport (translation initiation factor 1); sugar metabolism [pyruvate dehydrogenase E1 component alpha (PDH), beta-amylase, beta-fructofuranosidase, beta-glucosidase, pyruvate decarboxylase (PDC)]; ethylene [ETH, aminocyclopropanecarboxylate oxidase (ACO), EIN3-binding F-box protein (EBF), S-adenosylmethionine synthetase (SAMS)]; Gibbérelline (GA, DELLA protein); flavonoid biosynthesis [bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase (DFR), chalcone synthase (CHS), chalcone isomerase (CHI), leucoanthocyanidin dioxygenase (LDOX), naringenin 3-dioxygenase (FHT)]; phenylpropanoid biosynthesis [4-coumarate-CoA ligase (4CL)], beta-glucosidase, phenylalanine ammonia-lyase (PAL)]; pentose and glucuronate interconversions [pectinesterase (PE), pectate lyase (PL)]; jasmonate [JA, jasmonate ZIM domain-containing protein (JAZ)]; auxin (IAA, auxin-responsive protein IAA, auxin influx carrier, auxin responsive GH3 gene family); polyamines [PA, S-adenosylmethionine decarboxylase (SAMDC)].