Table 4. Variant calling results from the validation set.
Filtered variants | NGS Platform | ||
---|---|---|---|
Illumina MiSeq | Ion torrent PGM | ||
Total | False-positive | 0 | 26 |
False-negative | 0 | 16 | |
True-positive | 140 | 124 | |
True-negative | 982 | ||
Pathogenic | False-positive | 0 | 16 |
False-negative | 0 | 1 | |
True-positive | 20 | 19 | |
True-negative | 680 |