Table 1.
Genera, species, ITS1 length, and the percentage of fungi used in the mock community.
Fungi | IFMa | genus | species | ITS1 length/bp | Percentage of each species in the mock communityb |
---|---|---|---|---|---|
1 | 61908 | Acremonium | Acremonium alternatum | 274 | 4.1% |
2 | 61916 | Aspergillus | Aspergillus flavus | 299 | 3.7% |
3 | 54229 | Aspergillus | Aspergillus fumigatus | 302 | 3.7% |
4 | 62238 | Aspergillus | Aspergillus niger | 327 | 3.4% |
5 | 61604 | Aspergillus | Aspergillus terreus | 304 | 3.7% |
6 | 40009 | Candida | Candida albicans | 256 | 4.3% |
7 | 48313 | Candida | Candida dubliniensis | 258 | 4.3% |
8 | 61949 | Candida | Candida tropicalis | 279 | 4.0% |
9 | 62110 | Cladosporium | Cladosporium cladosporioides | 273 | 4.1% |
10 | 57770 | Cladosporium | Cladosporium herbarum | 272 | 4.1% |
11 | 50258 | Cryptococcus | Cryptococcus aureus | 228 | 4.9% |
12 | 46660 | Filobasidiella | Cryptococcus neoformans | 239 | 4.7% |
13 | 62224 | Fusarium | Fusarium oxysporum | 265 | 4.2% |
14 | 62065 | Fusarium | Fusarium solani | 267 | 4.2% |
15 | 47659 | Mucor | Mucor ramosissimus | 326 | 3.4% |
16 | 5768 | Nakaseomyces | Candida glabrata | 520 | 2.1% |
17 | 61632 | Penicillium | Penicillium chrysogenum | 293 | 3.8% |
18 | 62178 | Penicillium | Penicillium citrinum | 257 | 4.3% |
19 | 60598 | Penicillium | Penicillium digitatum | 292 | 3.8% |
20 | 49446 | Penicillium | Penicillium oxalicum | 294 | 3.8% |
21 | 47055 | Rhizopus | Rhizopus oryzae | 310 | 3.6% |
22 | 48570 | Rhodosporidium | Rhodosporidium babjevae | 270 | 4.1% |
23 | 40060 | Rhodotorula | Rhodotorula mucilaginosa | 270 | 4.1% |
24 | 40022 | Saccharomyces | Saccharomyces cerevisiae | 483 | 2.3% |
25 | 51186 | Trichoderma | Trichoderma viride | 301 | 3.7% |
26 | 51050 | Trichoderma | Trichoderma koningii | 301 | 3.7% |
aIFM is the abbreviation for Institute of Food Microbiology. bEach percentage is the theoretical mock community abundance of each fungal species. The amplicons were mixed to yield equal amount of DNA (each was 50 ng) of each sample.