Table 1.
Sample type | Sample | Raw reads | QC | Mapped reads | Mapping efficiency |
---|---|---|---|---|---|
Control ♀ | 1 | 69,130,197 | 55,971,358 | 51,865,339 | 92.7 |
2 | 59,953,540 | 46,892,283 | 43,166,939 | 92.1 | |
3 | 63,537,487 | 49,756,404 | 46,269,276 | 93 | |
4 | 56,255,792 | 43,270,695 | 40,186,046 | 92.9 | |
5 | 70,576,520 | 54,790,689 | 50,805,216 | 92.7 | |
Control ♂ | 1 | 46,376,849 | 34,835,622 | 33,238,813 | 95.4 |
2 | 65,673,113 | 51,651,522 | 47,823,627 | 92.6 | |
3 | 52,258,679 | 42,073,456 | 38,938,021 | 92.6 | |
4 | 59,220,633 | 47,041,870 | 43,660,840 | 92.8 | |
5 | 39,935,256 | 31,793,528 | 29,287,635 | 92.1 | |
BPA ♀ | 1 | 45,592,976 | 36,777,665 | 33,894,109 | 92.2 |
2 | 62,081,241 | 48,332,836 | 44,626,692 | 92.3 | |
3 | 48,640,791 | 37,908,444 | 34,912,852 | 92.1 | |
4 | 64,901,425 | 49,432,382 | 45,486,404 | 92 | |
5 | 71,890,086 | 56,217,073 | 51,563,272 | 91.7 | |
BPA ♂ | 1 | 66,308,474 | 49,724,724 | 45,792,562 | 92.1 |
2 | 56,296,984 | 44,408,114 | 40,927,183 | 92.2 | |
3 | 62,267,149 | 49,653,807 | 45,765,399 | 92.2 | |
4 | 68,054,969 | 53,980,003 | 50,117,318 | 92.8 | |
5 | 80,868,525 | 63,580,564 | 58,320,110 | 91.7 | |
EE ♀ | 1 | 55,370,002 | 43,910,820 | 40,531,812 | 92.3 |
2 | 65,056,368 | 50,734,415 | 46,898,849 | 92.4 | |
3 | 56,097,553 | 42,583,645 | 39,390,432 | 92.5 | |
4 | 54,602,416 | 42,752,931 | 39,532,155 | 92.5 | |
EE ♂ | 1 | 60,772,693 | 48,331,755 | 44,729,572 | 92.6 |
2 | 51,359,489 | 40,459,368 | 37,291,216 | 92.2 | |
3 | 65,978,847 | 52,139,890 | 48,467,572 | 93 |