TABLE 4.

Genomic features of ORFs in Kenyan bat CoVs and their putative TRSs^a

Genomic feature	229E-like virus		NL63-like virus
	BtKY229E-1	BtKY229E-8	BtKYNL63-9a	BtKYNL63-9b	BtKYNL63-15
Sequence length (nt)	27,837	27,666	28,363	28,677	28,479
GC%	38	39	39	43	43
ORF1ab
ORF size (nt)	20,286	20,304	20,277	20,349	20,355
Putative TRS	TCTCAACTAAAC(N219)AUG	TCTCAACTAAAC(N219)AUG	TCAACTAAAC(N214)AUG	CTCAACTAAAC(N215)AUG	TCTCAACTAAAC(N215)AUG
S gene
ORF size (nt)	4,095	4,095	4,119	4,122	4,134
Putative TRS	TCTCAACTAAATAAAAUG	UCTCAACUAAA(4)AUG	TCAACTAAAC(N1)AUG	CTCAACTAAAUG	TCAACTAAAC(N1)AUG
ORF3/4
ORF size (nt)	681	684	684	684	684
Putative TRS	TCAACTAAAC(N37)AUG	TCAACTAAAC(N37)AUG	TCAACTAAAC(N37)AUG	TCAACTAAAC(N37)AUG	CAACUAAAC(N37)AUG
E gene
ORF size (nt)	234	234	234	234	234
Putative TRS	TCTCAACTAAAC(N151)AUG	TCTTCAATGTAAC(N281)AUG	TTATAAC(N79)AUG	TCTGCTAAC(N151)AUG	TCTGATAAC(N151)AUG
M gene
ORF size (nt)	681	681	693	681	684
Putative TRS	CTAAACTAAAC(N4)AUG	CTAAACTAAAC(N4)AUG	CTAAAC(N6)AUG	TCTAAACTAAAC(N4)AUG	UCUAAACUAAA(N4)AUG
N gene
ORF size (nt)	1,161	1,200	1,225	1,302	1,302
Putative TRS	TTAATCTAAAC(N11)AUG	ATCTAAAC(N11)AUG	TCTAAACTAAAC(N3)AUG	CTAAACCAAAC(N4)AUG	UCUAAACUAAAC(N4)AUG
ORF8/ORFx
ORF size (nt)	288	198	287	291	270
Putative TRS	UCAACUAAAAC(1)AUG	UCAACUAAAAC(4)AUG	CAAAACCUAAC(N12)AUG	TCAACTAAAC(N567)AUG	CAACUAAAC(N234)AUG

^aTRS, transcription regulatory sequence.