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. 2017 Jan 25;18(Suppl 1):952. doi: 10.1186/s12864-016-3267-0

Table 1.

Performance of reference-assisted assembly tools

S. pyogenes A20 H. pylori G27 V. cholerae H1 chr1
Ref complete genome, Mb
1.85 1.67 3.08
Original assemblies
 Number (>300 bp) 38 40 41
 N50, kb 124 134 236
Final scaffolds
 GAAP 1 1 1
 AlignGraph 11 7 15
 Ragout 1 1 1
 MeDuSa 1 1 1
Coverage, recovered % (falsely located %)
 GAAP 98.65 (0.15) 98.57 (0.06) 97.85 (0)
 AlignGraph 81.93 (8.78) 61.75 (0) 79.13 (0)
 Ragout 97.35 (17.7) 98.28 (0.02) 98.05 (0)
 MeDuSa 98.2 (19.7) 98.95 (0.10) 98.19 (11.15)
Errors
 GAAP 19 5 8
 AlignGraph 3 2 1
 Ragout 6 5 5
 MeDuSa 9 11 14
Corrected N50, kb
 GAAP 273 277 2,026
 AlignGraph 124 138 351
 Ragout 103,6 1,121 1,323
 MeDuSa 252 207 245
HHS Vulnerability Disclosure