Table 4.
Performance on species of asymmetrical cGOF
| E.coli MG1655a | E.coli MG1655b | H.pylori OK310 | H.pylori Sat464 | |
|---|---|---|---|---|
| Reference genome, Mb | ||||
| 4.71 | 4.71 | 1.61 | 1.58 | |
| Original assemblies | ||||
| number (>300 bp) | 105 | 85 | 29 | 39 |
| N50, kb | 105 | 176 | 165 | 142 |
| Coverage, recovered % (falsely located %) | ||||
| GAAP | 91.89 (0) | 95.29 (0) | 98.91 (0) | 89.30 (5.23) |
| MeDuSa | 97.25 (0.96) | 97.89 (34.82) | 99.29 (10.13) | 89.61 (16.01) |
| Ragout | 96.19 (0.05) | 95.45% (0) | 98.48 (4.76) | 89.08 (5.43) |
| Errors | ||||
| GAAP | 20 | 33 | 13 | 14 |
| MeDuSa | 29 | 13 | 9 | 7 |
| Ragout | 21 | 21 | 25 | 9 |
| Corrected N50, kb | ||||
| GAAP | 411 | 313 | 1292 | 190 |
| MeDuSa | 268 | 308 | 964 | 348 |
| Ragout | 689 | 689 | 1330 | 348 |
aEmpirical PE reads data downloaded from NCBI SRA (SRR001665)
bSimulated PE reads data