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. 2017 Jan 25;18(Suppl 1):952. doi: 10.1186/s12864-016-3267-0

Table 4.

Performance on species of asymmetrical cGOF

E.coli MG1655a E.coli MG1655b H.pylori OK310 H.pylori Sat464
Reference genome, Mb
4.71 4.71 1.61 1.58
Original assemblies
 number (>300 bp) 105 85 29 39
 N50, kb 105 176 165 142
Coverage, recovered % (falsely located %)
 GAAP 91.89 (0) 95.29 (0) 98.91 (0) 89.30 (5.23)
 MeDuSa 97.25 (0.96) 97.89 (34.82) 99.29 (10.13) 89.61 (16.01)
 Ragout 96.19 (0.05) 95.45% (0) 98.48 (4.76) 89.08 (5.43)
Errors
 GAAP 20 33 13 14
 MeDuSa 29 13 9 7
 Ragout 21 21 25 9
Corrected N50, kb
 GAAP 411 313 1292 190
 MeDuSa 268 308 964 348
 Ragout 689 689 1330 348

aEmpirical PE reads data downloaded from NCBI SRA (SRR001665)

bSimulated PE reads data

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