Table 3. The 12 microsatellite markers used in the present study.
Microsatellite marker | Forward (F) and reverse (R) primer sequence (5’-3’) | Primer concentration (μM) | Allele frequency differential (δ) |
---|---|---|---|
Panel 1 | |||
D15 | F: [VIC] 5’–GCTCTCTGAAGAGGCCCTG– 3’ R: 5’–ATTCCAAGAGTGACAGCATCC– 3’ | 0.200.20 | 0.62 |
EF15-Mluc | F: [PET] 5’–GATCGCAGTCCCTTCC– 3’ R: 5’–GCTTATGGGGAGAAATGAG– 3’ | 0.270.27 | - |
F19 | F: [VIC] 5’–GCTAGCCATGGAGAAGGAAG– 3’ R: 5’–CCCAAATCTGTCTTTCAGGC– 3’ | 0.200.20 | 0.50 |
G2-Mluc | F: [FAM] 5’–TGAAAAGAACTGGAGAGGCTTT– 3’ R: 5’–AGATTGATGAATGTGAAAGGTCAG– 3’ | 0.200.20 | 0.71 |
G6-Mluc | F: [PET] 5’–GGCTTTTTGAAAAGACTGAGG– 3’ R: 5’–ACATCAGCCAGTTCCTGTTC– 3’ | 0.200.20 | 0.25 |
G31-Mluc | F: [FAM] 5’–GATCACCAATCATGTAAGGTTCAC– 3’ R: 5’–AAGTCAAGGCCAAGCAAGTC– 3’ | 0.200.20 | 0.68 |
Panel 2 | |||
B8-Mluc | F: [VIC] 5’–AAATACCTGAGTGAGAACATTTAGTGGAG– 3’ R: 5’–CTCATTAACTTCATTGGTAAGTGTTGTACC– 3’ | 0.400.40 | 0.50 |
C113 | F: [FAM] 5’- ACCTCCCTGCCCTGCAC– 3’ R: 5’–GCAATGCTTCCTCCAAGTCC– 3’ | 0.200.20 | 0.79 |
D15-Mluc | F: [NED] 5’–AAATTCTTTCCCTCCAAAGTGG– 3’ R: 5’–GCACGCTCAGACTCCTTCC– 3’ | 0.200.20 | 0.66 |
F19-Mluc | F: [PET] 5’–TGTAGCTAGCCATGGAGAAGG– 3’ R: 5’–AAATGGTTACATTACAGAAAATGCTC– 3’ | 0.200.20 | 0.59 |
G30-Mluc | F: [PET] 5’–GGCATGAACATGGAGTGAGG– 3’ R: 5’–GCTAGAAGTTATGGTCAATGTTCCTG– 3’ | 0.200.20 | 0.71 |
H23-Mluc | F: [VIC] 5’–TTGTCTACTAGCATTTGTCCAGTG– 3’ R: 5’–ATAGCTATGTTGCCTAACCTATTTACTC– 3’ | 0.400.40 | 0.43 |
The table provides the primers used in a specific multiplex PCR. The letters in square brackets indicate the fluoro-dyes used in one of the two sequences of each primer pair.