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. 2017 Feb 16;7:42471. doi: 10.1038/srep42471

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Copyright © 2017, The Author(s)

This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/

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(A) SimPlot showing the genetic similarity of PT-4472-G (PST-classified as hpSWEurope) to both the hpSWEurope and hpAfrica1 populations. (B) SimPlot showing the genetic similarity of Pt-B92-G (PST-classified as hpAfrica1) to hpSWEurope, hpAfrica1 and hpNEurope populations. For both plots, the Kimura 2-paramter model was used to calculate nucleotide similarities in a sliding-window of 1500 bp and a step size of 150 bp, with gap strip on. Cut-off of 90% similarity is shown in a blue dashed-line.