Table 1. Intact prophage genomes identified after whole genome sequencing.
| Strain | Population |
GC% |
Insertion Site |
Prophage |
Accession number | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Phage - PST | MLST | bacteria | prophage | 5′ | 3′ | CDS* PHAST | CDS* PHAGES | CDS* RAST | Kb | ||
| UK-EN31-U | hpNEurope | hpEurope | 39.0 | 36.7 | S-adenosylmethionine synthetase (EC 2.5.1.6) (jhp_0183) | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191) (jhp_0182) | 36 | 34 | 36 | 30.5 | KX119174 |
| UK-EN32-U | hpNEurope | hpEurope | 38.9 | 36.7 | S-adenosylmethionine synthetase (EC 2.5.1.6) (jhp_0183) | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191) (jhp_0182) | 36 | 34 | 35 | 29.9 | KX119206 |
| De-M53-M | hpNEurope | hpEurope | 38.8 | 36.2 | S-adenosylmethionine synthetase (jhp_0183) | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191) (jhp_0182) | 33 | 32 | 33 | 28.1 | KX119205 |
| Sw-577-G | hpNEurope | hpEurope | 38.9 | 36.3 | S-adenosylmethionine synthetase (EC 2.5.1.6) (jhp_0183) | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191) (jhp_0182) | 30 | 29 | 32 | 26.9 | KX119204 |
| Sw-A626-G | hpNEurope | hpEurope | 38.8 | 36.6 | ND | ND | 37 | 32 | 37 | 31.0 | KX119177 |
| Pt-B89-G | hpAfrica1 | hpEurope | 39.0 | 37.4 | S-adenosylmethionine synthetase (EC 2.5.1.6) (jhp_0183) | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191) (jhp_0182) | 32 | 33 | 32 | 27.4 | KX119203 |
| Pt-1293-U | hpAfrica1 | hpEurope | 39.0 | 36.8 | S-adenosylmethionine synthetase (EC 2.5.1.6) (jhp_0183) | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191) (jhp_0182) | 36 | 37 | 36 | 30.1 | KX119202 |
| Fr-ANT170-U | hpAfrica1 | hpEurope | 39.0 | 37.2 | S-adenosylmethionine synthetase (EC 2.5.1.6) (jhp_0183) | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191) (jhp_0182) | 37 | 33 | 36 | 31.2 | KX119201 |
| Fr-MEG235-U | hpAfrica1 | hpEurope | 39.1 | 37.3 | S-adenosylmethionine synthetase (EC 2.5.1.6) (jhp_0183) | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191) (jhp_0182) | 37 | 33 | 36 | 31.2 | KX119200 |
| Pt-5771-G | hpAfrica1 | hpEurope | 39.0 | 36.9 | S-adenosylmethionine synthetase (EC 2.5.1.6) (jhp_0183) | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191) (jhp_0182) | 34 | 34 | 34 | 29.8 | KX119199 |
| Pt-5322-G | hpAfrica1 | hpEurope | 39.1 | 36.8 | S-adenosylmethionine synthetase (EC 2.5.1.6) (jhp_0183) | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191) (jhp_0182) | 31 | 31 | 31 | 28.3 | KX119198 |
| Pt-228_99-G | hpAfrica1 | hpEurope | 39.0 | 37.2 | S-adenosylmethionine synthetase (EC 2.5.1.6) (jhp_0183) | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191) (jhp_0182) | 37 | 36 | 38 | 30.1 | KX119175 |
| Pt-1846-U | hpAfrica1 | hpEurope | 39.0 | 37.0 | GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4- phosphate synthase (jhp_0740) | ND | 32 | 31 | 32 | 28.0 | KX119176 |
| Pt-B92-G | hpAfrica1 | hpEurope | 38.8 | 36.9 | Membrane-associated phospholipid phosphatase (jhp_0787) | ND | 39 | 36 | 38 | 30.5 | KX119197 |
| Pt-4481-G | hpAfrica1 | hpEurope | 39.0 | 36.8 | ND | Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) (jhp_1353) | 32 | 31 | 32 | 25.4 | KX119196 |
| Fr-GC43-A | HpEastAsia | hpEurope | 39.0 | 36.3 | Competence protein ComGF (jhp_0650) | putative outer membrane protein HomA (jhp_0649) | 38 | 37 | 39 | 33.0 | KX119195 |
| Fr-G12-G | hpEastAsia | hpEurope | 38.9 | 36.3 | Competence protein ComGF (jhp_0650) | putative outer membrane protein (jhp_0649) | 36 | 35 | 36 | 28.6 | KX119194 |
| Fr-B58-M | hpEastAsia | hpEastAsia | 38.8 | 36.0 | Competence protein ComGF (jhp_0650) | putative outer membrane protein (jhp_0649) | 26 | 24 | 26 | 22.6 | KX119193 |
| Pt-212-99R-U | hpAfrica1 | hpEurope | 38.9 | 37.1 | Competence protein ComGF (jhp_0650) | putative outer membrane protein (jhp_0649) | 24 | 24 | 24 | 23.0 | KX119189 |
| Pt-1918-U | hpSWEurope | hspWAfrica | 39.1 | 36.2 | Hypothetical protein (jhp_1347) | Putative outer membrane protein (jhp_1346) | 34 | 33 | 34 | 28.7 | KX119192 |
| Pt-4497-U | hpSWEurope | hspWAfrica | 39.3 | 36.2 | hypothetical protein (jhp_0949) | Putative protein (jhp_0950) | 35 | 34 | 36 | 29.4 | KX119191 |
| Pt-4472-G | hpSWEurope | hpEurope | 38.8 | 36.6 | hypothetical protein (jhp_0191) | hypothetical protein (jhp_0193) | 32 | 30 | 32 | 27.6 | KX119190 |
| Fr-B41-M | hpSWEurope | hpWAfrica | 39.1 | 35.5 | Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2) (jph_0504) | hypothetical protein (jhp_0503) | 35 | 35 | 36 | 29.4 | KX119188 |
*Number of coding sequences (CDS) detected according to web service used; GC: guanine-cytosine; PST: prophage sequence typing; MLST: multilocus sequence typing.