TABLE 2.

List of primers for the MNase protection assay

M, amplicon midpoint, relative to CISH TSS (bp).

M	Forward primer (5′–3′)	Reverse Primer (5′-3′)
−453	CACACGCCGACAGACCTC	GGGAAGGGCCCTCTTATCTC
−438	GCTCGCAGGGAGGACAA	GGGAAGGGCCCTCTTATCT
−376	TTCCACCGCGAGATAAGAGG	GGGTCGGGGAAGTTAAGGAG
−344	GACGCAGAATGCCAGAAGG	GGCAGGTCGGAGAGATCAGT
−322	GGGCCCCTCCTTAACTTCC	GGCAGGTCGGAGAGATCAGT
−284	CCACTGATCTCTCCGACCT	CAATAGCAGCGCGTGGA
−256	GACCTGCCCCTCTGGGTA	AATCGCGACGCTGAAGGT
−214	GTCCACGCGCTGCTATTG	GACAGATTTCCAAGAACTTTCCA
−174	GTCGCGATTGGTCAGCTC	GGGCCCTGAGCAGTGAAA
−157	TTCCTGGAAAGTTCTTGGAAATC	GGCCCTGAGCAGTGAAA
−54	TCAGCCCGCGGTTCTA	TTTGTCTGCCGCGTTCC
−42	CCCGCGGTTCTAGGAAGA	GGCGAGCTGCTGCCTAAT
−29	TCCGGGAAGGGCTGGAA	GGCGAGCTGCTGCCTAATC
+20	AAAGGATTAGGCAGCAGCTC	GACAGGGACTGAGAGGCAGT
+76	CACTGCCTCTCAGTCCCT	AGCGCGTGCTGGGTA
+90	TGCCTCTCAGTCCCTGTCC	GGCTGGAGGGAACCAGTG
+164	CCCACTGGTTCCCTCCAG	AGAGAGCCGCGCTTACCC
+208	GACATGGTCCTCTGCGTTCAG	GTGGTGGCCGGGAAGG
+225	ACATGGTCCTCTGCGTTCAG	TAGCACGAAGCCCCTGTTCT
+249	GTAAGCGCGGCTCTCTG	TCAAGCCCTCCCAATGC
+295	AGAACAGGGGCTTCGTGCTA	CTTGCTCCTGAGGTCCGTCT
+324	GCATTGGGAGGGCTTGA	GGAGTGGGAGTGTCACAG
+384	GCTGTGACACTCCCACTC	CCGGTTTCCCAATCCACA
+412	CCCCCACACACTTACCTCAA	CCACCCTGTGAGTTCCTCCT