Fig 5.

(a) Phylogenetic tree of co-linearised whole genome nucleotide sequences of Loki and phages linked by TBLASTX searches. The neighbour joining tree was constructed using ClustalX with 1,000 bootstrap replicates. The scale bar represents substitutions per site. (b) Percent nucleotide identity matrix determined using EMBOSS Stretcher. (c) Matrix showing the percentage of shared genes determined using CoreGenes 3.5. Cells are coloured from green to red to show increasing similarity. Phages Jersey, Lambda, Cajan and Chi were included as outliers.