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. 2016 Dec 3;23(1):155–167. doi: 10.1007/s12298-016-0400-0

Table 2.

List of primer pairs and polymerase chain reaction (PCR) annealing temperatures of candidate barcodes markers used

Locus Primer name Sequence Annealing temperature References
rbcL rbcL 1F ATGTCACCACAAACAGAAAC 46 Fay et al. (1998)
rbcL 724R TCGCATGTACCTGCAGTAGC
rbcL aF ATGTCACCACAAACAGAGACTAAAGC 48 Levin et al. (2003), Kress et al. (2009)
rbcL aR GTAAAATCAAGTCCACCRCG
matK mat K 390 CGATCTATTCATTCAATATTC 48 Cuénoud et al. (2002)
matK 1326 TCTAGCACACGAAAGTCGAAGT
matK F ACCCAGTCCATCTGGAAATCTTGGTTC 50 Fofana et al. (1997)
matK R CGTACAGTACTTTTGTGTTTACGAG
ITS ITS 8F AACAAGGTTTCCGTAGGTGA 58 Wen and Zimmer (1996)
ITS 9R TATGCTTAAAYTCAGCGGGT
ITS 10F CGAACACGTTACAATACCG 55
ITS 11R ACCACTTGTCGTGACGTCC
trnLCtrnLD trnL C CGAAATCGGTAGACGCTACG 48.5 Taberlet et al. (1991)
trnL D GGGGATAGAGGGACTTGAAC
trnHpsbA psbA GTTATGCATGAACGTAATGCTC 55 Sang et al. (1997)
trnH CGCGCATGGTGGATTCACAATCC Tate and Simpson (2003)