Table 1.

Putative Peanut Orthologs of Soybean Maturity Genes, Meristem Identity Genes, and Known Peanut FAD2 Genes.

Gene	Organism	Peanut ortholog	Chr	Position	Significance	Nearest significant PHS	PHS	Average cycle polymorphic
E1	Soybean	Araip.W7PF8	B09	105 492 707...105 493 192	Binomial exact + simulation + PHS	110 532 140	42.11	4.58
E2	Soybean	Aradu.V81ZJ	A05	108 493 627...108 500 291	N/A
		Aradu.61FJ2	A09	117 706 867...117 717 279	Odds
		Araip.WW4C8	B09	138 395 951...138 406 437	Binomial exact + simulation + PHS	137 665 621	61.23	3.85
DT1	Soybean	Araip.T6XJY	B08	5 521 956...5 523 342	Binomial exact + simulation			5.00
		Aradu.RJP5K	A08	28 292 902...28 294 197	Binomial exact + simulation			3.92
E3	Soybean	Aradu.E3ZED	A06	6 070 225...6 074 408	N/A
		Araip.HY5UP	B06	10 971 497...10 975 711	N/A
E4	Soybean	Araip.K62H2	B09	26 116 014...26 122 370	Binomial exact + simulation			3.18
LFY	Arabidopsis	Aradu.BZU3P	A08	47 812 969...47 816 223	Binomial exact + simulation + PHS	48 109 634	21.28	4.67
		Araip.T09RD	B08	128 285 886...128 289 162	Binomial exact + simulation			3.86
FAD2	Peanut	Aradu.G1YNF	A09	114 690 776...114 693 267	Odds	113 715 476	50.76	3.75
		Araip.65EGG	B09	141 478 208...141 479 692	Binomial exact + simulation + PHS	142 124 962	33.91	5.31

Blastx was used to identity putative orthologs of E1, E2, E3, E4, DT1, and LFY. For each gene, the physical position in the A. duranensis and A. ipaensis genome sequences, if the nearest marker was significant and by which test, the nearest significant marker with an outlier PHS value, and the average cycle that marker was still polymorphic are presented.