Table 1.
Gene | Organism | Peanut ortholog | Chr | Position | Significance | Nearest significant PHS | PHS | Average cycle polymorphic |
---|---|---|---|---|---|---|---|---|
E1 | Soybean | Araip.W7PF8 | B09 | 105 492 707...105 493 192 | Binomial exact + simulation + PHS | 110 532 140 | 42.11 | 4.58 |
E2 | Soybean | Aradu.V81ZJ | A05 | 108 493 627...108 500 291 | N/A | |||
Aradu.61FJ2 | A09 | 117 706 867...117 717 279 | Odds | |||||
Araip.WW4C8 | B09 | 138 395 951...138 406 437 | Binomial exact + simulation + PHS | 137 665 621 | 61.23 | 3.85 | ||
DT1 | Soybean | Araip.T6XJY | B08 | 5 521 956...5 523 342 | Binomial exact + simulation | 5.00 | ||
Aradu.RJP5K | A08 | 28 292 902...28 294 197 | Binomial exact + simulation | 3.92 | ||||
E3 | Soybean | Aradu.E3ZED | A06 | 6 070 225...6 074 408 | N/A | |||
Araip.HY5UP | B06 | 10 971 497...10 975 711 | N/A | |||||
E4 | Soybean | Araip.K62H2 | B09 | 26 116 014...26 122 370 | Binomial exact + simulation | 3.18 | ||
LFY | Arabidopsis | Aradu.BZU3P | A08 | 47 812 969...47 816 223 | Binomial exact + simulation + PHS | 48 109 634 | 21.28 | 4.67 |
Araip.T09RD | B08 | 128 285 886...128 289 162 | Binomial exact + simulation | 3.86 | ||||
FAD2 | Peanut | Aradu.G1YNF | A09 | 114 690 776...114 693 267 | Odds | 113 715 476 | 50.76 | 3.75 |
Araip.65EGG | B09 | 141 478 208...141 479 692 | Binomial exact + simulation + PHS | 142 124 962 | 33.91 | 5.31 |
Blastx was used to identity putative orthologs of E1, E2, E3, E4, DT1, and LFY. For each gene, the physical position in the A. duranensis and A. ipaensis genome sequences, if the nearest marker was significant and by which test, the nearest significant marker with an outlier PHS value, and the average cycle that marker was still polymorphic are presented.