Table 5.
Distribution and localization of repeat sequences in cpDNA of Haberlea rhodopensis.
| Size (bp) | Start position1 | Start position2 | Type | Location | Region | E-value |
|---|---|---|---|---|---|---|
| 59 | 109798 | 109857 | F | ycf1 | IRA | 1.98e-26 |
| 59 | 109857 | 127696 | P | ycf1 | SSC | 1.98e-26 |
| 56 | 84299 | 84443 | F | rps19, IGS | LSC | 1.27e-24 |
| 56 | 84299 | 153043 | P | rps19, IGS(rpl2,trnH-GUG) | IRA, IRB | 1.27e-24 |
| 55 | 36105 | 36159 | F | IGS(trnS-UGA,lhbA) | LSC | 5.08e-24 |
| 41 | 98642 | 119664 | F | IGS(rps7,trnV-GAC),ndhA | IRA, SSC | 1.36e-15 |
| 41 | 119664 | 138870 | P | ndhA, IGS(trnV-GAC,ndhB) | SSC, IRB | 1.36e-15 |
| 40 | 59562 | 59562 | P | IGS(accD, psaI) | LSC | 5.45e-15 |
| 37 | 57457 | 57494 | F | IGS(rbsL, accD) | LSC | 3.49e-13 |
| 44 | 38927 | 41151 | F | psaB, psaA | LSC | 7.62e-12 |
| 37 | 6418 | 80983 | F | IGS(rps16,trnQ-UUG), IGS(rps8,rpl14) | LSC | 3.87e-11 |
| 33 | 113317 | 113349 | F | IGS(rpl32,trnL-UAG) | SSC | 8.93e-11 |
| 42 | 43919 | 119663 | F | ycf3,ndhA | LSC, SSC | 1.06e-10 |
| 39 | 43922 | 138870 | P | ycf3, IGS(trnV-GAC,rps7) | LSC, IRB | 1.45e-10 |
| 39 | 43922 | 98644 | F | ycf3, IGS(rps7, trnV-GAC) | LSC, IRA | 1.45e-10 |
| 31 | 162 | 199 | P | IGS(trnH-GUG,psbA) | LSC | 1.43e-09 |
| 30 | 8063 | 45627 | P | IGS(psbI, trnS-GCU) | LSC | 5.72e-09 |
| 33 | 63845 | 63845 | P | IGS(petA, psbJ) | LSC | 8.84e-09 |
| 36 | 91664 | 145820 | P | ycf2 | IRA, IRB | 2.69e-07 |
| 36 | 91664 | 91682 | F | ycf2 | IRA | 2.69e-07 |
| 36 | 91682 | 145838 | P | ycf2 | IRA, IRB | 2.69e-07 |
| 36 | 145820 | 145838 | F | ycf2 | IRB | 2.69e-07 |
| 35 | 94093 | 94093 | P | IGS(ycf15, trnL-CAA) | IRA | 9.87e-07 |
| 35 | 94093 | 143408 | F | IGS(ycf15,trnL-CAA), IGS(trnL-CAA,ycf15) | IRA, IRB | 9.87e-07 |
| 35 | 143408 | 143408 | P | IGS(trnL-CAA, ycf15) | IRB | 9.87e-07 |
| 32 | 8501 | 8501 | P | IGS(trnS-GCU,trnR-UCU) | LSC | 1.60e-06 |
| 34 | 74589 | 74599 | P | IGS(psbT, psbN) | LSC | 3.61e-06 |
| 31 | 20927 | 20929 | P | rpoC1 | LSC | 5.98e-06 |
| 30 | 13264 | 13264 | P | IGS(atpF, atpH) | LSC | 2.24e-05 |
| 31 | 54809 | 66123 | P | IGS(atpB,rbcL), IGS(psbE,petL) | LSC | 1.73e-04 |
| 30 | 9660 | 36718 | F | IGS(trnS-GCU,trnR-UCU), trnG-UCC | LSC | 6.27e-04 |
| 30 | 43934 | 138867 | P | ycf3, IGS(trnV-GAC, rps7) | LSC, IRB | 6.27e-04 |
| 30 | 43934 | 98656 | F | ycf3, IGS(rps7, trnV-GAC) | LSC, IRA | 6.27e-04 |
| 30 | 89251 | 148215 | P | ycf2 | IRA, IRB | 6.27e-04 |
| 30 | 89251 | 89293 | F | ycf2 | IRA | 6.27e-04 |
| 30 | 89293 | 148257 | P | ycf2 | IRA, IRB | 6.27e-04 |
| 30 | 91675 | 145815 | P | ycf2 | IRA, IRB | 6.27e-04 |
| 30 | 91675 | 91693 | F | ycf2 | IRA | 6.27e-04 |
| 30 | 91693 | 145833 | P | ycf2 | IRA, IRB | 6.27e-04 |
| 30 | 148215 | 148257 | F | ycf2 | IRB | 6.27e-04 |
F, forward repeat; P, palindrome repeat; IGS, intergenic spacers.