Table 1.
The experimental setup, qPCR results and microbial community characteristics.
Experiment name1 | Amendments | Incubation time | 16S rRNA gene copy nr mL-1 | dsrB gene copy nr mL-1 | DGGE band affiliations | Most abundant OTUs from amplicon sequencing | |
---|---|---|---|---|---|---|---|
acetate | |||||||
Acetate | + | - | 4 | 1,48E+03 | 3,69E+02 | Dehalobacter. Desulfurella. unresolved | Dethiobacter (31%) |
Acetate | + | - | 32 | 6,13E+04 | 5,36E+02 | Pseudomonadaceae. Mollicutes. Caulobacteraceae | Dethiobacter (32%) |
Acetate | + | - | 68 | 7,83E+04 | 3,88E+02 | Caulobacter. Pseudomonadaceae | Brevundimonas (72%) |
Ac + | + | + | 4 | 2,31E+03 | 2,82E+02 | Dethiosulfatibacter. Sulfobacillus. Desulfurella. Mollicutes | Dethiobacter (29%) |
Ac + | + | + | 32 | 3,29E+03 | 4,49E+02 | Caulobacter. Desulfurella. Novosphingobium | Dethiobacter (28%) |
Ac + | + | + | 68 | 1,01E+06 | 3,12E+03 | Rhizobium. Cellulomonas. Stenotrophomonas | Rhizobium (39%) |
- | + | 4 | 3,91E+03 | 4,79E+01 | Desulfurella. Mollicutes | Dethiobacter (40%) | |
- | + | 32 | 2,13E+04 | nd | Desulfurella. Mollicutes | Dethiobacter (31%) | |
- | + | 68 | 2,91E+04 | 5,96E+03 | Pseudomonadaceae. Agrobacterium. Sulfobacillus. Desulfurella | Novosphingobium (14%) Nocardioides (14%) | |
Ctrl-H2O | - | - | 4 | 2,38E+03 | 5,38E+01 | Desulfurella. Mollicutes. Desulfotomaculum | Dethiobacter (33%) |
Ctrl-H2O | - | - | 32 | 2,52E+03 | 1,66E+02 | Mollicutes | Dethiobacter (31%) |
Ctrl-H2O | - | - | 68 | 7,24E+04 | 2,95E+02 | Agrobacterium. Arthrobacterium. Cellulomonas | Cellulomonas (41%) |
Ctrl-fracture1 | - | - | 0 | 5,59E+02 | 3,24E+02 | Mollicutes. Desulfurella, sequences affiliating with plastids | Unclassified Chloroplast (77%) Dethiobacter (10%) |
1All experiments were done in microcosms except Ctrl-fracture, which represents sample from the intrinsic fracture fluid. nd, not detected.