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. 2017 Feb 20;8:232. doi: 10.3389/fmicb.2017.00232

Table 1.

The experimental setup, qPCR results and microbial community characteristics.

Experiment name1 Amendments Incubation time 16S rRNA gene copy nr mL-1 dsrB gene copy nr mL-1 DGGE band affiliations Most abundant OTUs from amplicon sequencing
acetate SO42
Acetate + - 4 1,48E+03 3,69E+02 Dehalobacter. Desulfurella. unresolved Dethiobacter (31%)
Acetate + - 32 6,13E+04 5,36E+02 Pseudomonadaceae. Mollicutes. Caulobacteraceae Dethiobacter (32%)
Acetate + - 68 7,83E+04 3,88E+02 Caulobacter. Pseudomonadaceae Brevundimonas (72%)
Ac + SO42 + + 4 2,31E+03 2,82E+02 Dethiosulfatibacter. Sulfobacillus. Desulfurella. Mollicutes Dethiobacter (29%)
Ac + SO42 + + 32 3,29E+03 4,49E+02 Caulobacter. Desulfurella. Novosphingobium Dethiobacter (28%)
Ac + SO42 + + 68 1,01E+06 3,12E+03 Rhizobium. Cellulomonas. Stenotrophomonas Rhizobium (39%)
SO42 - + 4 3,91E+03 4,79E+01 Desulfurella. Mollicutes Dethiobacter (40%)
SO42 - + 32 2,13E+04 nd Desulfurella. Mollicutes Dethiobacter (31%)
SO42 - + 68 2,91E+04 5,96E+03 Pseudomonadaceae. Agrobacterium. Sulfobacillus. Desulfurella Novosphingobium (14%) Nocardioides (14%)
Ctrl-H2O - - 4 2,38E+03 5,38E+01 Desulfurella. Mollicutes. Desulfotomaculum Dethiobacter (33%)
Ctrl-H2O - - 32 2,52E+03 1,66E+02 Mollicutes Dethiobacter (31%)
Ctrl-H2O - - 68 7,24E+04 2,95E+02 Agrobacterium. Arthrobacterium. Cellulomonas Cellulomonas (41%)
Ctrl-fracture1 - - 0 5,59E+02 3,24E+02 Mollicutes. Desulfurella, sequences affiliating with plastids Unclassified Chloroplast (77%) Dethiobacter (10%)

1All experiments were done in microcosms except Ctrl-fracture, which represents sample from the intrinsic fracture fluid. nd, not detected.

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