Table 2. Nucleotide sequence analysis of representative Rhizoctonia bataticola/Macrophomina phaseolina isolates infecting economically important plants and their disease list.
| Pathogen | Host |
Disease | Acc. No. | Country source | Sequence alignment analysis for Acc. No. HQ392814 (QC/ID in per cent)* |
||
|---|---|---|---|---|---|---|---|
| Common name | Scientific name | Complete sequence | Sequence fragment taken for primer design | ||||
| Rhizoctonia bataticola | Chickpea | Cicer arientinum | Dry root rot | HQ392814 | India | 100/99 | 100/100 |
| Pigeonpea | Cajanus cajan | Dry root rot | KJ629078 | India | 95/99 | 100/100 | |
| Linseed | Linum usitatissimum | Wilt | KM247370 | India | 95/98 | 100/99 | |
| Spider lily | Crinum asiaticum | Leaf disease | KX447538 | Malaysia | 99/98 | 100/100 | |
| Macrophomina phaseolina | Impatiens | Impatiens sp. | Root disease complex | KU726237 | USA | 98/99 | 100/100 |
| Sorghum | Sorghum bicolor | Charcoal rot | KU856652 | Denmark | 98/99 | 100/100 | |
| Olive | Olea europea | Die-back | KU863545 | Tunisia | 98/99 | 100/100 | |
| Sunflower | Helianthus annuus | Charcoal rot | KT862032 | Mongolia | 95/99 | 100/100 | |
| Potato | Solanum tuberosum | Charcoal rot/tuber blemishes | KU721993 | South Africa | 85/100 | 100/100 | |
| Common bean | Phaseolus vulgaris | Charcoal rot/leaf blight | KU831500 | Tunisia | 94/99 | 100/100 | |
| Indian jasmine | Jasminum multiflorum | Root rot | KT768135 | India | 98/99 | 100/100 | |
| Cowpea | Vigna unguiculata | Charcoal rot | KF951783 | Senegal | 92/99 | 100/100 | |
| Peanut | Arachis hypogae | Dry root rot/charcoal rot | KF951759 | Senegal | 96/99 | 100/100 | |
| Lady’s fingers | Abelmoschus esculentas | Dry root and foot rot | KF951754 | Senegal | 97/99 | 100/100 | |
| Roselle | Hibiscus sabdarifa | Charcoal rot | KF951701 | Louga, Senegal | |||
| 97/99 | 100/100 | ||||||
| Pearl millet | Pennisetum glaucum | Dry root rot | KF951691 | Niger | 92/99 | 100/100 | |
| Black gram | Phaseolus mungo | Charcoal rot | KF951637 | Denmark | 93/99 | 100/100 | |
| Chrysanthemum | Chrysanthemum sp. | Charcoal rot | KF951633 | USA | 92/99 | 100/100 | |
| Sugarcane | Saccharum officinarum | Charcoal rot | KF951631 | India | 97/99 | 100/100 | |
| Pigeonpea | Cajanus indicus | Dry root rot | KF951628 | Sri Lanka | 93/99 | 100/100 | |
| Maize | Zea mays | Charcoal rot | KF951627 | Palestine | 92/99 | 100/100 | |
| Sesamum | Sesamum indicum | Charcoal rot | KF951624 | Uganda | 93/99 | 100/100 | |
| Derris legume | Derris elliptica | Charcoal rot | KF951623 | Malaysia | 93/99 | 100/100 | |
| Black cottonwood | Populus trichocarpa | Charcoal rot | KF428466 | USA | 97/99 | 100/100 | |
| Cumin | Cuminum cyminum | Charcoal rot | KF453968 | Turkey | 95/99 | 100/100 | |
| Strawberry | Fragaria sp. | Crown rot | KC822431 | China | 98/99 | 100/100 | |
| Pectilis orchid | Pectilis susannae | Charcoal rot | KC920477 | India | 78/100 | 100/100 | |
| Soybean | Glycin max | Charcoal rot | KC202823 | Iran | 93/99 | 100/100 | |
| Sweet potato | Ipomoea batatas | Charcoal rot | JX945170 | USA | 98/99 | 100/100 | |
| Turmeric | Carcuma longa | Charcoal rot | JX535007 | India | 96/99 | 100/100 | |
| Mungbean | Vigna radiata | Root rot and leaf blight | HQ660594 | China | 98/99 | 100/100 | |
| Golden samphire | Inula crithmoides | Root rot | HQ649832 | Spain | 93/99 | 100/100 | |
*Values of QC (quarry coverage) and identity (ID) scores of all sequence segments retrieve from NCBI nucleotide sequence database that matched the query sequence (HQ392814).