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. 2017 Feb 20;7:43044. doi: 10.1038/srep43044

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Copyright © 2017, The Author(s)

This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/

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(A) Determining promoter elements from the region upstream of ncRNAs. Each motif (TATA boxes, BREs, and PPE motifs) was identified. (B) ncRNAs were classified according to their location (antisense and intergenic). The intergenic ncRNAs were further determined using functional groups based on Rfam. (C) The ncRNAs with expression changes over two fold in YPS, MMC, and MMF media are displayed with a heatmap. Groups I and II indicate upregulated and downregulated ncRNAs in MMC and MMF against YPS growth media, respectively. (D) Examples of ncRNAs expression profiles are displayed for snoRNA (TON_nc055), Hgc (TON_nc025), and sscA (TON_nc028) with the dRNA-seq profiles.