Extended Data Table 1.
Izumo1-Juno binding interface mutations
Technique | Protein | Role of residue | Kd | k a (× 105) (M s) −1 | k d (× 10−3) (s) −1 |
---|---|---|---|---|---|
SPR | Wild-type | n/a | 48 +/− 4 nM | 4.2 +/− 0.2 | 19.4 +/− 0.9 |
BLI | Wild-type | n/a | 59 +/− 1 nM | 1.15 +/− 0.02 | 6.7 +/− 0.1 |
Izumo1 mutants | |||||
BLI | E71A Izumo122-254 | salt bridge with Juno K163; L2 leash | 96 +/− 13 nM | 1.43 +/− 0.04 | 13.7 +/− 0.2 |
BLI | E71K Izumo122-254 | salt bridge with Juno K163; L2 leash | 119 +/− 19 nM | 1.65 +/− 0.04 | 19.5 +/− 0.3 |
BLI | D72A Izumo122-254 | H-bond to Q130 in unbound state | 71 +/− 8 nM | 1.78 +/− 0.04 | 12.6 +/− 0.2 |
BLI | Q130A Izumo122-254 | H-bond to D72 in unbound state | 56 +/− 19 nM | 1.27 +/− 0.03 | 6.8 +/− 0.1 |
BLI | W148A Izumo122-254 | conserved interface residue | no binding detected | ||
BLI | H157A Izumo122-254 | conserved interface residue | 1.8 +/− 1 μM | 0.51 +/− 0.05 | 79 +/− 2 |
BLI | R160A Izumo122-254 | salt bridge with Juno E45 | 730 +/− 78 nM | 0.78 +/− 0.04 | 56.3 +/− 0.9 |
BLI | R160E Izumo122-254 | salt bridge with Juno E45 | 2.2 +/− 1.2 μM | 0.32 +/− 0.02 | 51.2 +/− 1.1 |
Juno mutants | |||||
BLI | E45A Juno20-228 | salt bridge with Izumo1 R160 | 681 +/− 141 nM | 0.37 +/− 0.01 | 24.7 +/− 0.5 |
BLI | E45K Juno20-228 | salt bridge with Izumo1 R160 | 2.8 +/− 0.2 μM | 0.23 +/− 0.02 | 62.4 +/− 1.7 |
BLI | W62A Juno20-228 | conserved interface residue | 361 +/− 24 nM | 1.14 +/− 0.04 | 41.2 +/− 0.6 |
BLI | L81A Juno20-228 | conserved interface residue | 9.1 +/− 0.4 μM | 0.4 +/− 0.3 | 349 +/− 23 |
BLI | K163A Juno20-228 | salt bridge with Izumo1 E71 | 97 +/− 9 nM | 1.38 +/− 0.03 | 13.3 +/− 0.2 |
BLI | K163E Juno20-228 | salt bridge with Izumo1 E71 | 134 +/− 4 nM | 1.81 +/− 0.05 | 24.2 +/− 0.3 |
kinetic and binding affinity values are presented as the mean of technical triplicates (n=3) and errors as the standard deviation of the mean
Kd- dissociation constant
ka - rate of association
ka - rate of dissociation