Table 1.
Neuron term summary and examples
| Category | Term source | Summary | Examples | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Terms | Concepts | External links | Definitions | Terms | Concepts | External links | Definitions | ||
| Neuron type | Hippocampome.org | 641 | 122 | 1 | 122 | CA1 ivy interneuron | CA1 Ivy | http://hippocampome.org/formal-typedefs | Inhibitory neuron with axons in [CA1:SR CA1:SP CA1:SO], dendrites in [CA1:SR CA1:SP CA1:SO], and soma in [CA1:SR or CA1:SP or CA1:SO]; PV- SOM- nNOS+ |
| Morphology | Petilla | 38 | 41 | 75 | 64 | Soma - Shape -Triangular | Pyramidal | http://neurolex.org/wiki/Category:Pyramidal | Generally triangular-shaped soma with a dendrite emerging from the apical pole and basilar dendrites emerging from two or more basal poles |
| Hippocampome.org | 34 | 34 | 32 | 33 | CA1:SP | CA1:SP | http://atlas.brain-map.org/#atlas=1&plate=100960224&structure=399&x=4594.285714285715&y=3595.428641183036&zoom=-3&resolution=11.97&z=5 | Field CA1, pyramidal layer | |
| Molecular marker | Petilla | 175 | 176 | 752 | 183 | Transcription factor - Nkx2.1 | Transcription factor - Nkx2.1 | http://www.ncbi.nlm.nih.gov/gene/25628 | Transcription factor that binds and activates the promoter of thyroid specific genes such as thyroglobulin, thyroperoxidase, and thyrotropin receptor; may play a role in organogenesis and/or reproductive maturation and development [RGD, Feb 2006] |
| Hippocampome.org | 97 | 95 | 95 | 95 | PV | Parvalbumin | http://nakama.berkeleybop.org/amigo/gene_product/MGI:MGI:97821 | parvalbumin; Symbol:Pvalb; Type:protein; Taxon:Mus musculus; Synonyms: Parv, PV, Pva | |
| Electrophysiology | Petilla | 19 | 20 | 36 | 28 | Spike amplitude | APampl | http://bioportal.bioontology.org/ontologies/42295?p=terms&conceptid=X77KG | Nerve action potential amplitude |
| Hippocampome.org | 10 | 10 | 8 | 14 | APampl | APampl | http://neurolex.org/wiki/Category:Spike_Amplitude | Average amplitude of the first AP (measured from AP threshold to AP peak) | |
| Evidence & notes | Hippocampome.org | 490 | 429 | 434 | 436 | Gap junction | Electrical synapse | http://www.nlm.nih.gov/cgi/mesh/2011/MB_cgi?mode=&term=Electrical+Synapses&field=entry | Specialized junctions between neurons which connect the cytoplasm of one neuron to another allowing direct passage of an ion current |
| Sum | 1504 | 1049 | 1434 | 1097 | |||||
| Distinct | 1478 | 810 | 1378 | 924 | |||||