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. 2004 Dec;15(12):5383–5398. doi: 10.1091/mbc.E04-08-0715

Table 1.

Primer sequences

Plasmid Construction
Construct Primer Sequences Restriction sites Vector
pSRα-HA-TIA-1 5′-CACAGAATTCATGGAGGACGAGATG-3′ EcoRI pSRα-HA
5′-TATATAGTCGACTCACTGGGTTTCATAC-3′ SalI
pSRα-HA-RRM 5′-CACAGAATTCATGGAGGACGAGATG-3′ EcoRI pSRα-HA
5′-TATATAGTCGACTCATAGTTGTTCTGTTAGC-3′ SalI
pSRα-HA-PRD 5′-CACAGAATTCATGCGTCAGACTTTTTC-3′ EcoRI pSRα-HA
5′-TATATAGTCGACTCACTGGGTTTCATAC-3′ SalI
pSRα-HA-Sup35NM 5′-CACAGAATTCATGTCGGATTCAAACC-3′ EcoRI pSRα-HA
5′-TATATAGTCGACTCACAAATTGTTATTGTAGTTG-3′ SalI
pSRα-HA-RRM/NM 5′-CACAGAATTCATGGAGGACGAGATG-3′ EcoRI pSRα-HA
5′-TATATCTAGATAGTTGTTCTGTTAGC-3′ XbaI
5′-TATATCTAGAATGTCGGATTCAAACC-3′ XbaI
5′-TATATAGTCGACTCACAAATTGTTATTGTAGTTG-3′ blunt
pcDNA3-FLAG-HSP70 5′-CTCTCGGATCCGCCAAGAACACGGCGATC-3′ BamHI pcDNA3-FLAG
5′-CACACGAATTCCTAATCCACCTCCTCGAT-3′ EcoRI
pcDNA3-FLAG-HSC70 5′-CTCTCGGATCCAAGGGACCTGCAGTTGGC-3′ BamHI pcDNA3-FLAG
5′-CACACGAATTCTTAATCCACCTCTTCAAT-3′ EcoRI
Digoxygenin-labeled DNA probes
Probe Primer sequence Fragment size Template
HSP27 5′-GTCAAGACCAAGGATG-3′ 229 bases pcDNA3-HSP27
5′-GACTCGAAGGTGACTG-3′
HSP70 gene 2 UTR 5′-AAGTGGACTGTTGGGACTCAAGGACTTTG-3′ 239 bases Heat shocked
5′-CAAACAAACTCGTACAGAAGGTG-3′ COS7 cDNA
RT-PCR analysis
Primer sequence
HSP70 coding region 5′-ATAACGGCTAGCCTGAGGA-3′
5′-GTCCGACTGCACCACCGGG-3′
HSP70 gene 1 UTR 5′-GAGCTTCAAGACTTTGCATTTCTTAG-3′
5′-GGGCATCACTTGAATTTTAAAG-3′
HSP70 gene 2 UTR 5′-AAGTGGACTGTTGGGACTCAAGGACTTTG-3′
5′-CAAACAAACTCGTACAGAAGGTG-3′
ATF4 5′-CTGTGGGTCTGCCCGTCCCAAAC-3′
5′-TCAACTAGGGGACCCTTTTC-3′
GADD34 5′-GAGCAGCTTGCTCGGGATCGC-3′
5′-TCAGCCACGCCTCCCACTG-3′
XBP1 5′-CTTTGTGGTTGAGAACCAGG-3′
5′-GGGAGCTCCTCCAGGCTG-3′