Table 3. Characteristics of e-pilin genes found in non-Fe(III)-reducing bacterial species.
Organism | Type IVa pilin type | Immature pilin size (aa) | Mature pilin size (aa) | Leader sequence length | Accession number | #beta strands at C terminus* |
---|---|---|---|---|---|---|
Desulfobacterium autotrophicum | epilin | 73 | 59 | 14 | HRM2_27700 | 0 |
Hippea maritima | epilin | 68 | 59 | 9 | Hipma_0737 | 0 |
Hippea alviniae | epilin | 70 | 61 | 9 | G415DRAFT_0872 | 0 |
Deferribacter desulfuricans | epilin | 67 | 59 | 8 | DEFDS_1270 | 0 |
Flexistipes sinusarabici | epilin | 74, 70 | 67, 60 | 7, 10 |
Flexsi_2291, Flexsi_2288 |
1, 0 |
Desulfobacula toluolica | epilin | 71 | 58 | 13 | TOL2_21350 | 0 |
Desulfobacula phenolica | epilin | 72 | 59 | 13 | Ga0066824_11648 | 1 |
Desulfobacula sp. TS | epilin | Partial sequence | Ga0097800_108051 | 0 | ||
Desulfobotulus alkaliphilus | epilin | 73 | 60 | 13 | LZ24DRAFT_00006 | 0 |
Desulfobotulus sapovorans | epilin | 71 | 58 | 13 | BR04DRAFT_00394 | 0 |
Thauera linaloolentis | epilin and long type 4a pilin | 59, 150, 168 | 52, 144, 161 | 7, 6, 7 |
C666_06285, C666_05425, C666_15290 |
0, 4, 5 |
Thauera terpenica | epilin and long type 4a pilin | 59, 137 | 52, 128 | 7, 9 |
M622_11345, M622_01585 |
0, 3 |
Thauera humireducens | epilin and long type 4a pilin | 150, 60 | 144, 52 | 6, 8 |
WP_048709378, WP_048706629 |
4, 1 |
Beta strands were identified with the Jnet algorithm (Cuff & Barton, 2000) on the Jpred 4 server(Drozdetskiy, 2015).