Table 2. Reasons for discordant results between NGMASTER and published data using SPAdes assemblies.
| Reason for discordant result | MEGAHIT | SPAdes |
|---|---|---|
| Major errors (incorrect result) | ||
| Assembly error | 0 | 10 |
| Minor errors (incomplete/missing result) | ||
| Alternate conserved key motif | 1 | 1 |
| Multiple alleles detected | 6 | 2 |
| Allele not detected | 29 | 0 |
| Errors in published data | ||
| Possible sequence mix-up in published data | 4 | 4 |
| Probable transcription error in published data | 1 | 1 |
| Error in published data | 1 | 1 |