Table 5.
Hepevirus (no. of strains compared) | Degree of identity (%) | ||||||
---|---|---|---|---|---|---|---|
Full genome | ORF1 (genome positions 56–4699) | ORF2 (genome positions 4700–6607) | ORF3 (genome positions 4779–5192) | ||||
Nucleotides | Nucleotides | Amino acids | Nucleotides | Amino acids | Nucleotides | Amino acids | |
Bat hepevirus (1) | 67.8 | 65.5 | 72.0 | 70.9 | 79.2 | 73.2 | 44.3 |
Avian hepevirus (4) | 50.9–51.7 | 48.2–49.0 | 44.3–44.5 | 46.0–47.3 | 44.4–44.9 | 19.9–21.1 | 5.3–6.1 |
HEV genotype 3 (22) | 44.6–46.0 | 43.4–45.5 | 39.1–40.9 | 47.4–49.9 | 44.6–47.4 | 30.7–31.8 | 14.8–18.9 |
HEV genotype 4 (5) | 45.2–46.0 | 44.9–45.9 | 40.4–41.0 | 47.5–48.2 | 45.8–47.1 | 30.0–31.6 | 14.6–16.3 |
HEV genotype 1 (3) | 45.6–45.9 | 45.0–45.5 | 40.5–41.1 | 48.7–49.3 | 46.6–46.9 | 31.9–32.6 | 17.1 |
HEV genotype 2 (1) | 45.6 | 45.3 | 40.8 | 49.7 | 47.1 | 31.6 | 17.1 |
Rodent hepevirus (3) | 44.0–44.4 | 45.9–46.1 | 41.6–42.0 | 47.9–48.4 | 45.4–46.7 | 25.2–27.4 | 9.0 |
Ferret hepevirus (1) | 44.0 | 46.4 | 42.6 | 48.3 | 46.0 | 25.5 | 8.0–12.8 |
Trout hepevirus (1) | 33.7 | 34.9 | 24.5 | 30.2 | 15.5 | 21.1 | 9.8 |
aThe sequences were aligned using MAFFT. The evolutionary analyses were conducted using MEGA version 7. The GenBank accession numbers are as follows: JQ001749 for the bat hepevirus; AM943646, AM943647, KF511797, and AY535004 for the avian hepeviruses; AB189070, AB189075, AP003430, AB091394, AB222183, AB073912, AY115488, AF060669, AF082843, HQ389544, JN564006, AB290312, FJ998008, FJ705359, KC618402, AF455784, AB248521, EU360977, EU495148, FJ956757, FJ906895, and JQ013793 for the HEVs genotype 3; AB856243, AB602440, AB161717, AJ272108, and EU366959 for the HEVs genotype 4; AY230202, AF076239, and M80581 for the HEVs genotype 1; M74506 for HEV genotype 2; GU345042, AB847306, and JX120573 for the rodent hepeviruses; JN998607 for the ferret hepevirus; and NC_015521 for the trout hepevirus