5′-URA3 F |
TAAGGAACGTGCTGCTACTC |
ChIP-qPCR |
Figs. 4 B and C and 5 B–E
|
5′-URA3 R |
TTGGCGGATAATGCCTTTAGCG |
ChIP-qPCR |
Figs. 4 B and C and 5 B–E
|
5′-ScURA3 F |
CATGTCGAAAGCTACATATAAGGAAC |
ChIP-qPCR |
Fig. 4D |
5′-ScURA3 R |
CTTAACTGTGCCCTCCATGGAA |
ChIP-qPCR |
Fig. 4D |
3′-URA3 F |
GCTCAAAGAGACATGGGTGaA (lowercase “a” mismatches in S288c) |
ChIP-qPCR |
Figs. 4 B and C and 5 B–D
|
3′-URA3 R |
GCCGCATCTTCTCAAATATGC |
ChIP-qPCR |
Figs. 4 B and C and 5 B–D
|
549.7kb S |
TGAAGATGACATTGCTCCTTT |
ChIP-qPCR |
All ChIP |
549.7kb AS |
TGGATAATGGATCTGAAACCG |
ChIP-qPCR |
All ChIP |
534kb S |
ACAAGCATCATTCATAGCCT |
ChIP-qPCR |
All ChIP |
534kb AS |
ATCGTGGCTAGGACATTTTG |
ChIP-qPCR |
All ChIP |
SL-LEU-R31F |
CCTGGAATGGAGACCGTTTTCT |
ChIP-qPCR |
Fig. 5E |
SL-LEU-R31B |
GGGTTGTGCTATTGTCTTTATGCC |
ChIP-qPCR |
Fig. 5E |
atest
|
TAAAATCCTCGCACTATCGCTG |
qPCR |
Fig. S2 |
btest
|
CTATATGCAATAAAAAGGGTACAAGA |
qPCR |
Fig. S2 |
ctest
|
GAATACAAGGTTATCAGCCGTC |
qPCR |
Fig. S2 |
5′ ACT1 (F) |
CGTTACCCAATTGAACACGGT |
qPCR, RT-qPCR |
Figs. S1 and S2
|
3′ ACT1 (R) |
AAGGACAAAACGGCTTGGAT |
qPCR, RT-qPCR |
Figs. S1 and S2
|
URA3 RT-qPCR F |
AGAATTGTCATGCAAGGGCTC |
RT-qPCR |
Fig. S1 |
URA3 RT-qPCR R |
TCAAATATGCTTCCCAGCCT |
RT-qPCR |
Fig. S1 |
URA3f downstream F |
CAAAGTTGTGCTTTGGAT |
ChIP-qPCR |
Fig. S5 |
URA3f downstream R |
ACTTTCTAAGACGCTAGGA |
ChIP-qPCR |
Fig. S5 |
URA3p-LoxP-SpHis5MX-LoxP R |
ATTTGTGAGTTTAGTATACATGCATTTACTTATAATACAGATAACTTCGTATAATGTATGCTATACGAAGTTATTAGGTCT |
Strain construction |
Strains HJ4, HJ5, HJ6, HJ7, and HJ19 |
URA3p-LoxP-SpHis5MX-LoxP F |
ACTGCACAGAACAAAAACCTGCAGGAAACGAAGATAAATCATAACTTCGTATAGCATACATTATACGAAGTTATATTAAGGGTTCTC |
Strain construction |
Strain HJ5 |
URA3pΔTATA1-LoxP-SpHis5MX-LoxP F |
CAGAAGGAAGAACGAAGGAAGGAGCACAGACTTAGATTGGATAACTTCGTATAGCATACATTATACGAAGTTATATTAAGGGTTCTC |
Strain construction |
Strain HJ6 |
URA3pΔUAS-LoxP-SpHis5MX-LoxP F |
GTTCTTTTTTTTGATTCCGGTTTCTTTGAAATTTTTTTGA ATAACTTCGTATAGCATACATTATACGAAGTTATATTAAGGGTTCTC |
Strain construction |
Strain HJ7 |
URA3pΔdA-dT1-LoxP-SpHis5MX-LoxP F |
TTCAGGGTCCATAAAGCTTTTCAATTCATCTTTTTTTTTTTTGTTCTTTTATAACTTCGTATAGCATACATTATACGAAGTTATATTAAGGGTTCTC |
Strain construction |
Strain HJ19 |
ΔURA3p::LoxP-SpHis5MX-LoxP F |
GCATTTCTTTGTGGCTGTGGTTTCAGGGTCCATAAAGCTTATAACTTCGTATAGCATACATTATACGAAGTTATATTAAGGGTTCTC |
Strain construction |
Strain HJ4 |
dAdT-LoxP-HIS5-LoxP in LYS2 F |
CAAGATTTCAAATTAGACGAGTTCAAGCATCATTTAGTGGACTTTGCTTTCAATTCATCTTTTTTTTTTTTGTTCTTTTTTTTGATTCCG |
Strain construction |
Strain MSB155 |
pURA3-LoxP-HIS5-LoxP in LYS2 F |
CAAGATTTCAAATTAGACGAGTTCAAGCATCATTTAGTGGACTTTGCTTTTGTGGCTGTGGTTTCAGGGTC |
Strain construction |
Strains HJ22 and HJ23 |
Lys2-dAdT-LoxP R |
GGTGATCAGAGAGATTTTAGTTATGCAATTGGATGGATATAACTTCGTATAATGTATGCTATACGAAGTTATTAGGTCTA |
Strain construction |
Strains HJ22, HJ23, and MSB155 |
git1-trp1Δ::LoxP-SpHIS5MXf-LoxP F |
AGTGCACAAACAATACTTAAATAAATACTACTCAGTAATAACATAACTTCGTATAGCATACATTATACGAAGTTATATTAAGGGTTCTC |
Strain construction |
Strain MSB30 |
git1-trp1Δ::LoxP-SpHIS5MXf-LoxP R |
AAAAGAAATTTTGAGGTTAAAGGATGGAGGAAGAAATCGATACCAATTATAACTTCGTATAATGTATGCTATACGAAGTTATTAGGTCT |
Strain construction |
Strain MSB30 |
git1-trp1Δ::LoxP-SpHIS5MXr-LoxP F |
AATTTTGAGGTTAAAGGATGGAGGAAGAAATCGATACCAATTATAACTTCGTATAGCATACATTATACGAAGTTATATTAAGGGTTCTC |
Strain construction |
Strain MSB31 |
git1-trp1Δ::LoxP-SpHIS5MXr-LoxP R |
CAGGCAAGTGCACAAACAATACTTAAATAAATACTACTCAGTAATAACATAACTTCGTATAATGTATGCTATACGAAGTTATTAGGTCT |
Strain construction |
Strain MSB31 |
LoxP-MX-LoxP URA3 R |
AGTCTGTGCTCCTTCCTTCGTTCTTCCTTCTGCTCGGAGATTACCGAAATAACTTCGTATAATGTATGCTATACGAAGTTATTAGGTCT |
Strain construction |
Strains MSB153 and MSB156 |
LoxP-amdMX-LoxP URA3fΔrdAdT F |
TAATCCTTCACATCATGAAATATAAGCTAAATCGCATTTCTTATAACTTCGTATAGCATACATTATACGAAGTTATATTAAGGGTTCTC |
Strain construction |
Strain MSB156 |
LoxP-HIS3MX-LoxP URA3ΔrdAdT F |
ATTTATGGTGAAGGATAAGTTTTGACCATCAAAGAAGGTTAAATAACTTCGTATAGCATACATTATACGAAGTTATATTAAGGGTTCTC |
Strain construction |
Strain MSB153 |
URA3pDupstreamdAdT F |
GGTCAAATAATCCTTCACATCATGAAATATAAGCTAAATCGCATTTCTTTCCATAAAGCTTTTCAATTCATC |
Strain construction |
Strain HJ24 |
upstream URA3 NRG1 to AAA |
ACATCATGAAATATAAGCTAAATCGCATTTCTTTGTGGCTGTGGTTTCAAAATCCATAAAGCTTTTCAATTCATC |
Strain construction |
Strain HJ25 |
frURA3t R |
GACTTATGGAACATGGAACC |
Strain construction |
Strains HJ24 and HJ25 |