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. 2017 Jan 30;114(7):1584–1588. doi: 10.1073/pnas.1616413114

Table S1.

GltPh kinetic parameters determined by HS-AFM

Condition τ(up), s k(out-in), s−1 p(up) τ(down), s k(in-out), s−1 p(down) ΔG(translation), kBT Q, % ΔG(activation), kBT
Apo (no substrates) 6.6 0.15 0.79 1.8 0.56 0.21 1.3 27 1.0
Na+ (10 × Kd of Na+) 33.0 0.03 0.94 2.1 0.47 0.06 5
Transport (Na+ + Asp) 11.1 0.08 0.84 2.1 0.48 0.16 1.7 39 0.5
TBOA (blocker) 100.0 0.01 0.98 2.3 0.42 0.02 1

τ(up) (column 1), τ(down) (column 4), and Q (column 8) were determined directly in HS-AFM experiments. The rate constants k(out-in) (column 2), and k(in-out) (column 5) are calculated as 1/τ(up) and 1/τ(down), respectively. The state probabilities p(up) (column 3) and p(down) (column 6) are calculated according to Eqs. S4 and S5, respectively. The free-energy differences between states (column 7) were calculated from τ(up) and τ(down) according to Eq. S2. The free energy of protomer activation was calculated from Q according to Eq. S1.