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. Author manuscript; available in PMC: 2018 Feb 22.
Published in final edited form as: J Am Chem Soc. 2017 Feb 8;139(7):2682–2692. doi: 10.1021/jacs.6b11433

Figure 5.

Figure 5

Superimposition of the bent DNA (purple) from Step I and standard B-DNA duplex (yellow, generated by 3DNA42). Hydrogen atoms are present but most are not shown for clarity. In the magnified region, the B-DNA is in yellow with 8-oxoG and p1 in orange; the DNA from step I is purple with 8-oxoG and p1 colored by atom. The difference in geometries is consistent with the distance data shown in Figure 1B.