Table 3.
Location of all prophage or remnant prophage elements in the D23580 chromosome and genes related to Salmonella virulence encoded on each element.
| Prophage/remnant | Location on D23580 chromosome | Length (bp) | Virulence-related genes |
|---|---|---|---|
| BTP1 | 368797 – 409321 | 40,525 | st313-td (STMMW_03531), gtrCc (STMMW_03911), gtrAc (SMMTW_03921) |
| Def1 (SPI-16) | 652441 – 656532 | 4,091 | gtrBa (STMMW_06241), gtrAa (STMMW_06251) |
| Gifsy-2D23580 (BTP2) | 1094166 – 1140420 | 46,254 | gtgA (STMMW_10381), sodCI (STMMW_10551), sseI (STMMW_10631-pseudogene), gtgE (STMMW_10681) gtgF (STMMW_10691) |
| Def2 | 1945242 – 1951433 | 6,191 | sopE2 (STMMW_18441) |
| ST64BD23580 (BTP3) | 2065743 – 2105830 | 40,087 | sseK3 (STMMW_19812) |
| Def3 (inc. SPI-12) | 2354483 – 2369638 | 15,155 | sspH2 (STMMW_22721) |
| Gifsy-1D23580 (BTP4) | 2753352 – 2803478 | 50,126 | gogB (STMMW_26001), gipA (STMMW_26191), gtgA (STMMW_26331), |
| BTP5 | 3370278 – 3401458 | 31,181 | – |
| Def4 | 4440630 – 4461045 | 20,415 | gtrBb (STMMW_41541), gtrAb (STMMW_41551) |
All elements are present in ST19 representative strain 4/74, apart from BTP1 and BTP5.