Table 1.
Species | Voucher | Raw Reads | Clean Reads | Nuclear Loci Captureda | Nuclear Loci k-mer Depthb | mtDNA (bp)c | mtDNA k-mer Depthd |
---|---|---|---|---|---|---|---|
Phrynosomatidae | |||||||
Callisaurus draconoides | MVZ 265543 | 9,622,116 | 9,035,068 | 575 | 23,280 | 13,106 | 1,502,772 |
Cophosaurus texanus | UWBM 7347 | 9,176,180 | 8,625,204 | 573 | 24,401 | 15,609 | 2,482,706 |
Holbrookia maculata | UWBM 7362 | 12,314,136 | 11,604,340 | 573 | 31,000 | 12,865 | 1,307,531 |
Petrosaurus thalassinus | MVZ 161183 | 4,500,868 | 3,959,796 | 523 | 8,281 | 7,898 | 248,342 |
Phrynosoma sherbrookei | MZFC 28101 | 7,634,142 | 6,971,920 | 579 | 14,107 | 12,967 | 47,287 |
Sceloporus occidentalis | UWBM 6281 | 13,531,214 | 12,733,646 | 540 | 30,235 | 7,422 | 113,757 |
Uma notata | SDSNH 76166 | 2,332,400 | 2,099,068 | 577 | 4,232 | 7,296 | 20,763 |
Urosaurus ornatus | UWBM 7587 | 3,427,288 | 3,042,766 | 577 | 6,673 | 6,286 | 28,028 |
Uta stansburiana | UWBM 7605 | 12,927,696 | 12,085,734 | 538 | 25,034 | 16,703 | 1,144,368 |
Outgroups | |||||||
Gambelia wislizenii | UWBM 7353 | 9,874,902 | 7,824,714 | 549 | 5,180 | 15,790 | 581,925 |
Liolaemus darwinii | LJAMM-CNP 14634 | 3,253,800 | 2,935,874 | 581 | 8,715 | 11,751 | 41,572 |
aTotal loci targeted = 585.
bAverage number of 90-bp k-mers across all captured loci.
cTotal base pairs; aligned length = 17,187 bp.
dNumber of 90-bp k-mers.