Table 3.
The Number of Nuclear Gene Trees Supporting Alternative Phrynosomatid Lizard Topologies
| Clade | Number of Loci | Frequency (%)a |
|---|---|---|
| Holbrookia + Callisaurusb | 175 | 37.2 |
| Holbrookia + Callisaurus + Cophosaurusb | 340 | 72.2 |
| Sand lizardsb | 210 | 44.6 |
| Sand lizards + Phrynosomab | 319 | 67.7 |
| Sceloporinesb | 226 | 48.0 |
| Sceloporus + Urosaurus + Utab | 91 | 19.3 |
| Sceloporus + Urosaurusb | 130 | 27.6 |
| Cophosaurus + Callisaurus | 120 | 25.5 |
| Holbrookia + Cophosaurusc | 103 | 21.9 |
| Urosaurus + Utad | 74 | 15.7 |
| Sceloporus + Uta | 63 | 13.4 |
| Sceloporus + Petrosaurusd | 55 | 11.7 |
| Uma + Cophosaurus | 19 | 4.0 |
aCalculated from complete loci only (471 total).
bClade supported by the sequence capture data in figure 1.
cEarless lizard clade.
dMitochondrial gene tree relationship.