Table 4.

Summary of ddRADseq Data within Sample Clustering

Species		Clusteringa = 80%		Clustering = 90%		Clustering = 95%
	Readsb	Locic	Depthd	Loci	Depth	Loci	Depth
Callisaurus draconoides	1,883,604	10,723	43.4	12,449	36.9	13,100	17.8
Cophosaurus texanus	1,452,471	8,686	41.8	10,048	35.9	10,553	18.4
Holbrookia maculata	699,921	4,657	27.5	7,880	24.2	11,156	14.2
Petrosaurus thalassinus	2,590,961	11,929	51.9	14,168	46.2	14,868	20.3
Phrynosoma sherbrookei	814,375	6,043	31.6	7,257	26.9	7,692	14.9
Sceloporus occidentalis	1,404,985	6,852	52.8	5,368	45.0	5,561	20.0
Uma notata	806,846	3,751	40.3	4,698	35.9	5,298	25.3
Urosaurus ornatus	3,465,996	7,695	122.5	9,512	102.6	8,305	28.9
Uta stansburiana	4,818,547	9,177	119.5	11,878	96.5	14,058	29.7
Gambelia wislizenii	5,406,187	14,306	88.4	19,823	66.9	23,088	23.6

^aThreshold for clustering of reads within a species.

^bRaw read counts after sample demultiplexing.

^cLoci passing quality filters.

^dMean sequencing depth.