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. 2015 Feb 7;7(3):706–719. doi: 10.1093/gbe/evv026

Table 4.

Summary of ddRADseq Data within Sample Clustering

Species Clusteringa = 80%
Clustering = 90%
Clustering = 95%
Readsb Locic Depthd Loci Depth Loci Depth
Callisaurus draconoides 1,883,604 10,723 43.4 12,449 36.9 13,100 17.8
Cophosaurus texanus 1,452,471 8,686 41.8 10,048 35.9 10,553 18.4
Holbrookia maculata 699,921 4,657 27.5 7,880 24.2 11,156 14.2
Petrosaurus thalassinus 2,590,961 11,929 51.9 14,168 46.2 14,868 20.3
Phrynosoma sherbrookei 814,375 6,043 31.6 7,257 26.9 7,692 14.9
Sceloporus occidentalis 1,404,985 6,852 52.8 5,368 45.0 5,561 20.0
Uma notata 806,846 3,751 40.3 4,698 35.9 5,298 25.3
Urosaurus ornatus 3,465,996 7,695 122.5 9,512 102.6 8,305 28.9
Uta stansburiana 4,818,547 9,177 119.5 11,878 96.5 14,058 29.7
Gambelia wislizenii 5,406,187 14,306 88.4 19,823 66.9 23,088 23.6

aThreshold for clustering of reads within a species.

bRaw read counts after sample demultiplexing.

cLoci passing quality filters.

dMean sequencing depth.