Table 3. Genes carrying position(s) with enrichment of a specific ancestry components.
| Locus tag | Gene | Description | Population showing the enrichment | Enrichment | P-value* |
|---|---|---|---|---|---|
| HP0026 | gltA | type II citrate synthase | hpEuropeColombia | Asia_high | 1.4E-10 |
| HP0042 | trbI protein | hpEuropeColombia | Africa_high | 1.0E-09 | |
| HP0099 | tlpA | methyl-accepting chemotaxis protein | hspAfrica1NAmerica | Africa_low | 1.2E-09 |
| HP0160 | hypothetical protein | hpEuropeColombia | Europe_high | 4.1E-12 | |
| HP0216 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase | hpEuropeColombia | Africa_high | 3.9E-10 | |
| HP0252 | hypothetical protein | hpEuropeColombia | Africa_low | 4.3E-09 | |
| Europe_high | 2.8E-13 | ||||
| HP0272 | hypothetical protein | hpEuropeColombia | Europe_high | 3.4E-10 | |
| HP0408 | hypothetical protein | hpEuropeColombia | Europe_high | 2.1E-13 | |
| HP0486 | hofC | outer membrane protein | hpEuropeColombia | Asia_high | 7.3E-09 |
| Europe_high | 1.2E-10 | ||||
| hspAfrica1NAmerica | Asia_high | 7.8E-15 | |||
| hspAfrica1Nicaragua | Europe_high | 8.8E-11 | |||
| HP0492 | hypothetical protein | hpEuropeColombia | Europe_high | 9.0E-09 | |
| HP0568 | hypothetical protein | hpEuropeColombia | Africa_high | 2.2E-09 | |
| HP0597 | penicillin-binding protein 1A (PBP-1A) | hpEuropeColombia | Africa_high | 9.5E-10 | |
| HP0605 | hypothetical protein | hpEuropeColombia | Asia_high | 8.8E-11 | |
| HP0607 | hefC | acriflavine resistance protein | hpEuropeColombia | Africa_low | 2.4E-09 |
| HP0610 | toxin-like outer membrane protein (vacA paralog) | hpEuropeColombia | Europe_high | 3.1E-09 | |
| HP0667 | hypothetical protein | hpEuropeColombia | Africa_high | 3.5E-09 | |
| HP0872 | phnA | alkylphosphonate uptake protein | hpEuropeColombia | Asia_high | 3.9E-11 |
| HP0913 | alpB/hopB | outer membrane protein Omp21 | hpEuropeColombia | Asia_high | 9.8E-15 |
| hspAfrica1Nicaragua | Asia_high | 1.1E-12 | |||
| HP0953 | hypothetical protein | hpEuropeColombia | Europe_high | 2.5E-11 | |
| HP0978 | cell division protein (ftsA) protein | hpEuropeColombia | Africa_low | 4.6E-09 | |
| HP1055 | hypothetical protein | hpEuropeColombia | Africa_high | 4.8E-09 | |
| HP1086 | hemolysin (tly) | hpEuropeColombia | Europe_high | 2.8E-10 | |
| HP1156 | hypothetical protein | hspAfrica1NAmerica | Africa_low | 6.8E-09 | |
| HP1339 | exbB | biopolymer transport protein | hpEuropeColombia | Africa_low | 5.5E-09 |
| hpEuropeColombia | Europe_high | 8.2E-15 | |||
| hspAfrica1Nicaragua | Europe_high | 1.4E-12 | |||
| HP1395 | hypothetical protein | hpEuropeColombia | Europe_high | 6.9E-10 | |
| HP1487 | hypothetical protein | hpEuropeColombia | Africa_high | 5.5E-09 | |
| HP1512 | frpB4 | iron-regulated outer membrane protein | hpEuropeColombia | Asia_high | 3.6E-10 |
| hspAfrica1Nicaragua | Asia_high | 3.5E-10 | |||
| hspAfrica1Nicaragua | Europe_high | 4.1E-13 |
*the lowest P-value among polymorphic sites in a gene