Table 3.
The Early Chemical Enrichment of Actives (ROC-EFfpf=0.001) of the Optimal Trained Ensemble against the Test Set
Kinase | Ensemble Size | Cluster Method | Ensemble Members | Higher than Xtal? | a Statistically significant |
---|---|---|---|---|---|
MK2 | 1 | RMSD | Centroid 3 | YES | YES |
CDK2 | 2 | POVME | Centroids 1 & 4 | YES | NO |
ROCK1 | 2 | POVME | Centroid 2 & xtal | NO | NO |
b AKT1 | 2 | POVME | Centroids 4 & 5 | YES | NO |
3 | RMSD | Centroids 5, 6, & 7 | YES | NO | |
IGF1R | 3 | POVME | Centroids 2, 3, & xtal | YES | NO |
ABL | 2 | RMSD | Centroids 2 & 4 | YES | YES |
Statistical significance is determined at the 95% confidence level; p<0.05.
Two ensemble sizes are shown because both results in the same ROC-EF value which is the highest.
The centroids highlighted in red contributed the most to the VS performance.