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. Author manuscript; available in PMC: 2017 Oct 24.
Published in final edited form as: J Chem Inf Model. 2016 Oct 3;56(10):1923–1935. doi: 10.1021/acs.jcim.6b00261

Table 3.

The Early Chemical Enrichment of Actives (ROC-EFfpf=0.001) of the Optimal Trained Ensemble against the Test Set

Kinase Ensemble Size Cluster Method Ensemble Members Higher than Xtal? a Statistically significant
MK2 1 RMSD Centroid 3 YES YES
CDK2 2 POVME Centroids 1 & 4 YES NO
ROCK1 2 POVME Centroid 2 & xtal NO NO
b AKT1 2 POVME Centroids 4 & 5 YES NO
3 RMSD Centroids 5, 6, & 7 YES NO
IGF1R 3 POVME Centroids 2, 3, & xtal YES NO
ABL 2 RMSD Centroids 2 & 4 YES YES
a

Statistical significance is determined at the 95% confidence level; p<0.05.

b

Two ensemble sizes are shown because both results in the same ROC-EF value which is the highest.

The centroids highlighted in red contributed the most to the VS performance.