Table 1. Association between the 21 selected previously reported SNPs and risk of CRC in the study population.
SNP | Chr | Position | Mapped Gene | Risk Allele | Risk Allele Frequency | Reported p-value | Reported OR | OR MCC-Spain | 95% CI | p-value |
---|---|---|---|---|---|---|---|---|---|---|
rs10752881 | 1 | 183004356 | KRT18P28 - LAMC1 | A | 0.76 | 5.0E-06 | 1.07 | 1.11 | 1.01–1.21 | 0.04 |
rs6691170 | 1 | 221872104 | DUSP10 - QRSL1P2 | T | 0.31 | 1.0E-09 | 1.06 | 1.09 | 0.99–1.20 | 0.08 |
rs10936599 | 3 | 169774313 | MYNN | C | 0.19 | 3.0E-08 | 1.04 | 1.10 | 0.98–1.23 | 0.11 |
rs1321311 | 6 | 36655123 | N/A | C | 0.30 | 1.0E-10 | 1.10 | 1.03 | 0.93–1.15 | 0.54 |
rs7758229 | 6 | 160419220 | SLC22A3 | T | 0.67 | 8.0E-09 | 1.28 | 1.07 | 0.96–1.18 | 0.21 |
rs16892766 | 8 | 116618444 | LINC00536 - EIF3H | C | 0.39 | 3.0E-18 | 1.27 | 1.17 | 0.98–1.39 | 0.08 |
rs6983267 | 8 | 127401060 | CCAT2 - LOC101930033 | G | 0.82 | 1.0E-14 | 1.27 | 1.10 | 1.00–1.21 | 0.04 |
rs10795668 | 10 | 8659256 | RNA5SP299 - LINC00709 | G | 0.73 | 5.0E-15 | 1.15 | 1.06 | 0.95–1.17 | 0.30 |
rs4948317 | 10 | 58811675 | BICC1 | C | 0.30 | 7.0E-08 | 1.10 | 1.07 | 0.97–1.18 | 0.19 |
rs3802842 | 11 | 111300984 | COLCA2 - COLCA1 | C | 0.08 | 6.0E-10 | 1.11 | 1.09 | 0.98–1.20 | 0.12 |
rs3824999 | 11 | 74634505 | POLD3 | G | 0.13 | 4.0E-10 | 1.08 | 1.09 | 1.00–1.20 | 0.06 |
rs10879357 | 12 | 72020783 | TPH2 | G | 0.50 | 3.0E-06 | 1.25 | 1.00 | 0.91–1.11 | 0.94 |
rs11169552 | 12 | 50761880 | DIP2B - ATF1 | C | 0.82 | 2.0E-10 | 1.09 | 1.02 | 0.91–1.14 | 0.80 |
rs7315438 | 12 | 115453598 | TBX3 - UBA52P7 | T | 0.41 | 6.0E-06 | 1.11 | 1.03 | 0.94–1.13 | 0.53 |
rs4444235 | 14 | 53944201 | RPS3AP46 - MIR5580 | C | 0.43 | 8.0E-10 | 1.11 | 1.03 | 0.94–1.13 | 0.51 |
rs9929218 | 16 | 68787043 | CDH1 | G | 0.46 | 1.0E-08 | 1.10 | 1.13 | 1.01–1.25 | 0.03 |
rs4939827 | 18 | 48927093 | SMAD7 | T | 0.27 | 8.0E-28 | 1.20 | 1.22 | 1.11–1.34 | 0.03 |
rs10411210 | 19 | 33041394 | RHPN2 | C | 0.31 | 5.0E-09 | 1.15 | 1.01 | 0.88–1.16 | 0.92 |
rs4925386 | 20 | 62345988 | LAMA5 | C | 0.58 | 2.0E-10 | 1.08 | 1.08 | 0.98–1.19 | 0.14 |
rs961253 | 20 | 6423634 | FGFR3P3 - CASC20 | A | 0.28 | 2.0E-10 | 1.12 | 1.10 | 1.00–1.22 | 0.05 |
rs5934683 | X | 9783434 | GPR143 - SHROOM2 | C | 0.57 | 7.0E-10 | 1.07 | 1.04 | 0.93–1.17 | 0.46 |
SNPs associated with CRC risk in MCC population with p < 0.05 are highlighted in bold.