Table 1.

Sample details and the sequencing scheme used for each sample

Sample ID	% Unique mapped reads to Camelus dromedarius mt genome			mt genome length (bp)	%mt genome recovered	Average read depth	GenBank accession no.
	MYbaits capture	MYbaits‐TD capture	Shotgun
AP2	0.123		0.0008	9943	59.7	2.45	KU605058
AP3	0.294	0.175		15 315	92.0	10.63	KU605059
AQ5	0.013			4083	24.5	2.75	KU605067
AQ24	0.011		0.004	5516	33.1	3.56	KU605060
AQ30	0.241	0.088		15 843	95.1	47.10	KU605061
AQ34	0.058		0	12 162	73.0	8.87	KU605062
AQ40	0.346		0.0003	12 422	74.6	19.33	KU605063
AQ46	0.006		0	4143	24.8	1.44	KU605064
AQ48	0.002		0	3829	23.0	1.56	KU605065
AQ49	0.001		0	2850	17.1	1.62	KU605066
Palm152	0.005	0.001		5149	30.9	1.27	KU605068
Palm157*	0.010			10 890	65.4	2.26	KU605069
Palm171*	0.011			7402	44.4	1.82	KU605070
SAG2	0.028	0.046		14 514	87.2	8.48	KU605071
Tel622	0.0001	0.0006	0.0005
Tel623	0.0002		0.0009
Also1	0.0003		0.0008
Also10	0.0007		0.0008

All the libraries were built using the double‐stranded library (DSL) method and subjected to sequencing both pre‐ and postcapture using MYbaits. The samples with an asterisk were only sequenced postcapture. The percentage and average coverage of the unique reads mapped to the dromedary mitochondrial genome and the total length of the recovered mtDNA for each sample are shown. For the wild samples, the length of the genome is not calculated, as a result of low numbers of reads mapped to the reference genome.