Node values are posterior clade probability. For Cichla pinima sensu lato (indicated in bold), the localities where those clades were observed, as well which described species (C. pinima sensu stricto, C. jariina, C. vazzoleri, C. thyrorus) were observed in each clade, are denoted. Locality codes follow Table 1 and Fig 1, and the values associated with some localities are (the number of individuals bearing haplotypes from that clade / total individuals collected at that locality). For the endemic western lineages (yellow), each is labeled to match the mtDNA reference in Fig 4 (A,B,C). A fully annotated version of this genealogy is presented as S1 Fig.