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. 2017 Feb 24;12(2):e0172952. doi: 10.1371/journal.pone.0172952

Table 1. Single nucleotide polymorphisms (SNPs) and corresponding mitochondrial DNA haplogroups for Verteba samples from partial mtDNA sequences obtained at Grand Valley State University (GVSU) for the coding (sequence ranges: 4153–4396, 6950–7051, 12217–12308) and HVR-I (sequence range: 15974–16407) regions and complete mitochondrial genome sequences obtained at Harvard Medical School (HMS, sequence range: 1–16569).

Nucleotide positions reported are changes relative to the revised Cambridge Reference Sequence (rCRS) [16].

Specimen ID, radiocarbon age (2 σ) Mitochondrial haplogroup SNPs (GVSU) Number of clones sequenced (GVSU) SNPs (HMS)
V1.1.1, 3,700–3,500 cal BCE U8b1a2 C7028T, A12308G, T16172C, C16259T, C16266T, T16311C 32 Not determined
V1.2, 3,700–3,500 cal BCE H rCRS 16 Not determined
V3.13.1, 3,700–3,500 cal BCE HV Not determined 0 A263G, A750G, A1438G, A2706G, A4769G, C7028T, C13347T, A15326G, T16311C
V3.14.1, 3,700–3,500 cal BCE T2b C7028T, T16126C, C16294T, C16296T, T16304C 33 A073G, A263G, G513A, G709A, A750G, G930A, A1438G, G1888A, A4769G, A4917G, G5147A, T6293C, C7028T, G8697A, A8860G, T10463C, A11084G, A11251G, G11719A, A11812G, G13368A, A14233G, C14766T, G14905A, A15326G, C15452A, A15607G, G15928A, T16126C, C16294T, C16296T, T16304C, T16519C
V3.15.1, 3,700–3,500 cal BCE U8b1b C7028T, A12308G, T16189C, C16234T, T16324C 42 Not determined
V3.16.1, 3,700–3,500 cal BCE HV0 C7028T, T16298C 16 Not determined
V3.17.1, 3,700–3,500 cal BCE H5a rCRS 16 A263G, C456T, A750G, T3645C, A4769G, A8860G, T14978Y, A15326G, T16304C
M5, 3,600–2,900 cal BCE H1b T16189Y, T16356C 30 A093G, A263G, A750G, A1438G, G3010A, A3796G, A8860G, A15326G, T16189Y, T16356C, T16519C