Table 1. Comparison of genome features of all human-infective Plasmodium species and P. malariae-like.
Feature | P. malariae | P. malariae-like | P. ovale curtisi | P. ovale wallikeri | P. falciparum | P. knowlesi | P. vivax |
---|---|---|---|---|---|---|---|
Genome size (Mb) | 33.6 | 23.7 | 33.5 | 33.5 | 23.3 | 24.4 | 29.1 |
Scaffoldsa | 14 (47) | 14 (36) | 14 (638) | 14 (771) | 14 (0) | 14 (297) | 14 (226) |
Gaps | 0 | 3697 | 894 | 1264 | 0 | 98 | 560 |
GC content | 0.24 | 0.30 | 0.29 | 0.29 | 0.19 | 0.39 | 0.40 |
Gene Number* | 6,540 | 4,764** | 7,132 | 7,052** | 5,429 | 5,291 | 6,642 |
Pseudogenes | 623 | N/A | 494 | N/A | 153 | 7 | 154 |
pir | 255 | 4 | 1,949 | 1,375 | 227 | 70 | 1,212 |
var | 0 | 0 | 0 | 0 | 103 | 0 | 0 |
SICAvar | 0 | 0 | 0 | 0 | 0 | 237 | 0 |
STP1 | 166 | 2 | 70 | 94 | 0 | 0 | 9 |
tryptophan-rich antigen | 42 | 7 | 41 | 33 | 3 | 29 | 40 |
ETRAMP | 8 | 4 | 7 | 11 | 15 | 10 | 10 |
PHIST | 30 | 3 | 54 | 21 | 81 | 44 | 82 |
fam-lb | 396 | 0 | 0 | 0 | 0 | 0 | 0 |
fam-mb | 283 | 1 | 0 | 0 | 0 | 0 | 0 |
Nucleotide Diversity | 3.2 × 10−4 | 6.5 × 10−3 | 1.9 × 10−4 | 3.7 × 10−4 | 5.7 × 10−4 | N/A | 9.9 × 10−4 |
including pseudogenes and partial genes, excluding non-coding RNA genes.
Non-curated gene-models.
Unassigned contigs indicated in parentheses.
Previously included in the Pm-fam-a family7, which consisted of all unannotated transmembrane-containing genes.