TABLE 2.
Biotinylated depletion DNA oligos
| Gene | Transcript | DNA sequence (5′ to 3′) |
|---|---|---|
| RNVU1-1 | snRNA | CAGGGGAAAGCGCGAACGCAGTCCCCCACTACC |
| RNVU1-7 | snRNA | CAGGGGAAAGCGCGGACGCAGTCCCCCACT |
| RNU2-1 | snRNA | TGCACCGTTCCTGGAGGTACTGCAATACCAGGTCGATG |
| RNU4-1 | snRNA | GCCTACAGCAGTCTCCGTAGAGACTGTCAAAAATTGCCA |
| RNU5B-1 | snRNA | AGCCTTGTCGGAACAAGGCCTCAAAAAATTAGCTTAAGAC |
| RNU5E-1 | snRNA | AGCCTTGCCAAAGCAAGGCCTCAAAAAATTGGGTTAAG |
| SNORD3D | snoRNA | CCACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAA |
| SNORD12B | snoRNA | CAGACAGAAACTGGCTTAGAAAAGTTAGATCAACATAGTCGATC |
| SNORD12C | snoRNA | CTAACTGGCAAAATATAAGACGTCAGCATTGTCGATCTGATG |
| SNORD27 | snoRNA | CTCAGTAGTAAGATGACATCACTTGAAAGTTCAGCCATATGC |
| SNORD29 | snoRNA | CTCAGGTGTTCATGTATTTTCACTGTCGGTCATAGTGAGC |
| SNORD31 | snoRNA | TACCTTTCAGTCACACATTGATCAGACTGGGGCGGTAT |
| SNORD80 | snoRNA | CATCAGATAGGAGCGAAAGACTTAATATTGCTCATCAGCG |
| SNORD81 | snoRNA | TTGTCATCAAGTAATCAGTGAGAGAGTTCAAGTTGG |
| SNORD118 | snoRNA | GGAGCAATCAGGGTGTTGCAAGACCTGATTACGCAGAG |
| RNA5S1 | rRNA | CACCCGGTATTCCCAGGCGGTCTCCCATCCAAGTAC |
| RNA5-8S5 | rRNA | AGCGACGCTCAGACAGGCGTAGCCCCGGGAGG |
| RNA28S5 | rRNA | ACAAACCCTTGTGTCGAGGGCTGACTTTCAATAGATCGCA |
| MT-TM (ID: 4569) | mitochondrial tRNA | GTACGGGAAGGGTATAACCAACATTTTCGGGGTATGGG |
| MT-TV (ID: 4577) | mitochondrial tRNA | TGGTCAGAGCGGTCAAGTTAAGTTGAAATCTCCTAAGTG |
DNA oligos possess a 5′-biotin-TEG and are HPLC purified.