Table 1.

Usage and source of various cohorts in this work.

Cohort Name	Used in this study in:	Numbers of individuals	Original Reference
Sydney PCR cohort	Figures 2, 3, 4, 5, 6, 7, 9	n=39 untreated MS n=40 healthy controls	[1]
Miami cohort	Figures 3, 6, 7	n=73 untreated MS n=32 healthy controls	[1]
Treated MS cohort	Figure 10	Total, n=78: n=10, glatiramer acetate n=18, fingolimod n=20, interferon beta n=23, natalizumab n=7, dimethyl fumarate	[8]
ANZgene (microarray) cohort	Figures 1B, 6, 7	n=99 untreated MS; n=45 healthy controls	[2]
Sydney RNASeq cohort	Figures 1, 3, 6, 7, Supplementary Figure. 1 and 2	n=32 untreated MS; n=40 healthy controls	[4]
CIS cohort	Figure 1B	n=42 CIS	[3]