Table 1.
Summary of Illumina transcriptome sequencing and assembly for Taihangia rupestris flower
| EM | EH | LM | LH | EM + EH + LM + LH | |
|---|---|---|---|---|---|
| Number of raw reads | 22,638,962 | 22,588,764 | 22,645,959 | 22,932,502 | |
| Number of clean reads | 21,136,736 (93.36%) | 20,963,888 (92.81%) | 21,096,120 (93.16%) | 21,399,682 (93.32%) | 84,596,426 |
| Number of base pairs | 5,325,126,434 | 5,281,720,198 | 5,314,989,939 | 5,391,407,889 | 21,313,244,460 |
| GC (%) | 46.42 | 46.74 | 46.29 | 46.54 | 46.50 |
| Q20 (%) | 97.41 | 97.34 | 97.39 | 97.44 | 97.40 |
| Q30 (%) | 91.47 | 91.27 | 91.42 | 91.59 | 91.43 |
| Number of contigs | 2,247,974 | 2,222,351 | 2,178,823 | 2,292,464 | 8,230,709 |
| Number of transcripts | 117,759 | 115,373 | 102,649 | 110,462 | 167,441 |
| Total unigenes generated | 42,630 | 41,419 | 38,764 | 39,857 | 59,064 |
| N50 length (bp) | 1,541 | 1,561 | 1,570 | 1,611 | 1,594 |
| Average unigene length (bp) | 855 | 878 | 886 | 905 | 840 |