Table 1.
Small RNA mapping information using the Chinese Spring genome as a referencea
| Mapping to genome | Control | Cold treated | ||
|---|---|---|---|---|
| Replicate 1 | Replicate 2 | Replicate 1 | Replicate 2 | |
| Total reads | 22597554 | 20332674 | 22083486 | 22660147 |
| Genome | 18463571 (81.71%) | 16773198 (82.49%) | 17963869 (81.35%) | 18516384 (81.71%) |
| Intron | 813339 (3.60%) | 698142 (3.43%) | 781581 (3.54%) | 865990 (3.82%) |
| Exon | 823689 (3.65%) | 1355522 (6.67%) | 672555 (3.05%) | 651084 (2.87%) |
| Repeat | 6137517 (27.16%) | 5819410 (28.62%) | 5964382 (27.01%) | 6221074 (27.45%) |
| rRNA | 96048 (0.43%) | 98947 (0.49%) | 99067 (0.45%) | 86400 (0.38%) |
| tRNA | 662619 (2.93%) | 1250548 (6.15%) | 496776 (2.25%) | 464297 (2.05%) |
| snoRNA | 3600 (0.02%) | 3373 (0.02%) | 3650 (0.02%) | 3489 (0.02%) |
| snRNA | 8789 (0.04%) | 8726 (0.04%) | 8371 (0.04%) | 9541 (0.04%) |
aChinese genome version 2