Table 2.
MiRNA targets validated by degradome sequencinga
| miRNA Classification | miRNA families | Target verified by the Degradome tags |
|---|---|---|
| Conserved in plants | miR156 | Squamosa promoter-binding-like protein (SPB) |
| miR159 | myb domain protein (MYB) | |
| Disease resistance protein | ||
| miR160 | auxin response factor (ARF) | |
| miR166 | Homeobox-leucine zipper protein HOX9 (START domain) | |
| miR167 | Auxin response factor (ARF) | |
| miR168 | Argonaute family protein (AGO) | |
| miR169 | Nuclear transcription factor Y subunit A (NTFYA) | |
| miR172 | AP2-like ethylene-responsive transcription factor (AP2) | |
| miR2118 | Emsy N Terminus (ENT)/plant Tudor-like domains-containing protein (EMSY N-terminal) | |
| miR2275 | Cathepsin B-like cysteine proteinase | |
| miR3057 | subtilisin-like serine protease 2 LENGTH = 764 | |
| miR3062 | Mitochondrial transcription termination factor family protein LENGTH = 390 | |
| miR3084 | Disease resistance protein | |
| miR319 | TCP family transcription factor (TCP) | |
| miR393 | Transport inhibitor response 1-like protein | |
| miR394 | F-box family protein (F-box) | |
| miR396 | Growth-regulating factor (GRF) | |
| Grass-specific | miR1122 | fructose-bisphosphate aldolase 2 LENGTH = 398 |
| miR444 | Regulator of chromosome condensation (RCC1) family | |
| RING finger protein 5 | ||
| miR5048 | receptor kinase 3 LENGTH = 850 | |
| miR5049 | Pre-mRNA-processing-splicing factor LENGTH = 2359 | |
| miR5062 | Ubiquitin carboxyl-terminal hydrolase | |
| Argonaute family protein (AGO) | ||
| Elongation factor 1-beta | ||
| miR5071 | Disease resistance protein | |
| Triticum-specific | miR5168 | Homeobox-leucine zipper protein (START domain) |
| miR5048 | receptor kinase 3 | |
| miR9674 | Pentatricopeptide repeat (PPR) | |
| miR9772 | UPI000234FD81 related cluster | |
| miR9863 | Disease resistance protein | |
| Wheat-specific | miR9662 | Mitochondrial transcription termination factor family protein |
| miR9676 | alpha/beta-Hydrolases superfamily protein | |
| miR9679 | Elongation factor 1-gamma |
aAt least two transcripts were present in the degradome data