Table 2. Summary of the immunofluorescence quality analysis. A qualitative as well as the two quantitative characteristics are listed (1) to describe the specificity of the stain, (2) to estimate the signal intensity obtained from the staining protocol described by the SNB ratio and (3) to rate the homogeneity of the antibody stain described by the R-value of the similarity of the intensity profiles to the DAPI stain. Stain specificity: Green indicates that the stain for microtubules shows the spindle apparatus during mitosis and that β-catenin is located at the cell periphery. Signal intensity: Green indicates a ratio above 60, orange indicates ratios between 30 and 60 and white is used for a ratio below 30. Signal homogeneity: Green indicates above 0.75, orange indicates between 0.55 and 0.74 and, white is used for values below 0.54.
stain specificity | signal intensity | signal homogeneity | |||
---|---|---|---|---|---|
PFA-Triton-4°C | o.n. | α-tubulin | yes | 19.40 | 0.568 |
PFA-Triton-4°C | o.n. | β-catenin | yes | 60.63 | 0.501 |
PFA-Triton-37°C | 4 hours | α-tubulin | yes | 62.41 | 0.823 |
PFA-Triton-37°C | o.n. | α-tubulin | yes | 81.75 | 0.797 |
PFA-Triton-37°C | 4 hours | β-catenin | yes | 137.10 | 0.633 |
PFA-Triton-37°C | o.n. | β-catenin | yes | 274.58 | 0.433 |
PFA-EtOH-37°C | 4 hours | α-tubulin | yes | 25.86 | 0.706 |
PFA-EtOH-37°C | o.n. | α-tubulin | yes | 50.71 | 0.589 |
PFA-EtOH-37°C | 4 hours | β-catenin | yes | 71.23 | 0.559 |
PFA-EtOH-37°C | o.n. | β-catenin | yes | 187.75 | 0.488 |
PFA-MetOH-37°C | 4 hours | α-tubulin | yes | 25.22 | 0.762 |
PFA-MetOH-37°C | o.n. | α-tubulin | no | 50.92 | 0.857 |
PFA-MetOH-37°C | 4 hours | β-catenin | yes | 107.27 | 0.435 |
PFA-MetOH-37°C | o.n. | β-catenin | yes | 119.76 | 0.713 |
MetOH-Ac-37°C | 4 hours | α-tubulin | no | 15.13 | 0.956 |
MetOH-Ac-37°C | o.n. | α-tubulin | no | 22.69 | 0.876 |
MetOH-Ac-37°C | 4 hours | β-catenin | yes | 33.52 | 0.870 |
MetOH-Ac-37°C | o.n. | β-catenin | yes | 106.41 | 0.709 |
EtOH-37°C | 4 hours | α-tubulin | no | 36.30 | 0.947 |
EtOH-37°C | o.n. | α-tubulin | no | 109.37 | 0.884 |
EtOH-37°C | 4 hours | β-catenin | yes | 113.56 | 0.875 |
EtOH-37°C | o.n. | β-catenin | yes | 260.54 | 0.846 |
Ac: acetone, EtOH: ethanol, MetOH: methanol, o.n.: overnight.